RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TMPPEQ6ZT21 453 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 HIST2H3AQ71DI3 136 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 TMUB2Q71RG4 321 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 TMED4Q7Z7H5 227 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 SERPINA11Q86U17 422 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 C4orf19Q8IY42 314 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 GABRG1Q8N1C3 465 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 CPXM2Q8N436 756 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 SPICQ8N5J4 248 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 SAMD12Q8N8I0 201 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 CSNK2A3Q8NEV1 391 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OR11H1Q8NG94 326 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OR4C5Q8NGB2 326 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OR52L2PQ8NGH6 319 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OR4D6Q8NGJ1 314 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OR51L1Q8NGJ5 315 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OR51S1Q8NGJ8 323 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OR4P4Q8NGL7 312 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OR1J2Q8NGS2 313 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OR11H2Q8NH07 326 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OR5AK3PQ8NH89 298 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 RPLP0P6Q8NHW5 317 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 CASTOR1Q8WTX7 329 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OR8D1Q8WZ84 308 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 BCL2L2Q92843 193 aaPredicted RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 TMEM159Q96B96 161 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 KTI12Q96EK9 354 aaPredicted RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 SMIM10Q96HG1 83 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 CDKN2AIPNLQ96HQ2 116 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 SLC35E1Q96K37 410 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 JSRP1Q96MG2 331 aaPredicted RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 YPEL4Q96NS1 127 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 TP53RKQ96S44 253 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 CLCC1Q96S66 551 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 ABHD1Q96SE0 405 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 CD180Q99467 661 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 EPYCQ99645 322 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 SOSTQ9BQB4 213 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 NRIP2Q9BQI9 281 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 WDR83Q9BRX9 315 aaKnown RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 MED10Q9BTT4 135 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 RNF26Q9BY78 433 aaPredicted RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 SLC25A31Q9H0C2 315 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 GABARAPL1Q9H0R8 117 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 P2RY12Q9H244 342 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 DPAGT1Q9H3H5 408 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 TMEM185BQ9H7F4 350 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 METTL17Q9H7H0 456 aaPredicted RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 MED20Q9H944 212 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 WDR54Q9H977 334 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 ANKRA2Q9H9E1 313 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 FN3KRPQ9HA64 309 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 IL21RQ9HBE5 538 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 NOX3Q9HBY0 568 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 Q9N2J8 555 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 SIX2Q9NPC8 291 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 B3GAT2Q9NPZ5 323 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 MBNL1Q9NR56 388 aaKnown RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 MMP26Q9NRE1 261 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 FGF21Q9NSA1 209 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 TMEM45AQ9NWC5 275 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 AHSPQ9NZD4 102 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 MTCH1Q9NZJ7 389 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 DOK5Q9P104 306 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 RNF150Q9ULK6 438 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 PADI3Q9ULW8 664 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 EXOSC1Q9Y3B2 195 aaKnown RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 FAM96BQ9Y3D0 163 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 ARL5AQ9Y689 179 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 COL14A1Q05707 1796 aaKnown RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 MAST2Q6P0Q8 1798 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 PXDNQ92626 1479 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 NUP210LQ5VU65 1888 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 TJP1Q07157 1748 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 COL24A1Q17RW2 1714 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 NPIPA5A0A0B4J1W7 369 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 TRBV2A0A0J9YWF9 115 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 LOC100130705A0A1B0GUX0 176 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ANKRD20A5PA0PJZ0 165 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 IGLON5A6NGN9 336 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 OR6C76A6NM76 312 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 YJEFN3A6XGL0 299 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 RNF212BA8MTL3 300 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ZNF705EA8MWA4 302 aaPredicted RBP2.88□□□□□ -1.95
VPS35-208ENST00000568612 PPP5D1E7EU14 171 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 NPIPA5E9PKD4 350 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ZNF670-ZNF695F2Z2N8 137 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 NPIPA3F8WFD2 350 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 K7EQM0 130 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 NME4O00746 187 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 HS3ST1O14792 307 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 HNRNPDLO14979 420 aaKnown RBP2.88□□□□□ -1.95
VPS35-208ENST00000568612 PIP5K1BO14986 540 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 B4GALT5O43286 388 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 FGF16O43320 207 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 STK16O75716 305 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 OR6A2O95222 327 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 METTL18O95568 372 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 GPR75O95800 540 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ACTL6AO96019 429 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms