RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 OR10H5Q8NGA6 315 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 TMEM163Q8TC26 289 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 APH1BQ8WW43 257 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 DNAJC9Q8WXX5 260 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 PPP1R14AQ96A00 147 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 EME1Q96AY2 570 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 SLAMF6Q96DU3 332 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 ZNF582Q96NG8 517 aaPredicted RBP7.86□□□□□ -1.15
VPS35-206ENST00000565228 INTS14Q96SY0 518 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 TEAD3Q99594 435 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 PITX2Q99697 317 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 ATF6BQ99941 703 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 RBM4BQ9BQ04 359 aaKnown RBP7.86□□□□□ -1.15
VPS35-206ENST00000565228 WACQ9BTA9 647 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 C1QTNF5Q9BXJ0 243 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 TTTY10Q9BZA0 68 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 C1orf198Q9H425 327 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 CXorf56Q9H5V9 222 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 ADGRL4Q9HBW9 690 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 TBCCD1Q9NVR7 557 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 PTTG3PQ9NZH4 202 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 TAAR3PQ9P1P4 343 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 DUSP13Q9UII6 198 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 NDRG4Q9ULP0 352 aaKnown RBP7.86□□□□□ -1.15
VPS35-206ENST00000565228 POLR1DQ9Y2S0 133 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 FN1P02751 2386 aaKnown RBP7.86□□□□□ -1.15
VPS35-206ENST00000565228 ARHGAP32A7KAX9 2087 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 MALRD1Q5VYJ5 2156 aa7.86□□□□□ -1.15
VPS35-206ENST00000565228 VWC2LB2RUY7 222 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 H7C1Q1 480 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 PSMD9O00233 223 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 WNT9BO14905 357 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 CLIC3O95833 236 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 ABHD16AO95870 558 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 F12P00748 615 aaPredicted RBP7.85□□□□□ -1.15
VPS35-206ENST00000565228 IGHV1-46P01743 117 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 IGHV3-13P01766 116 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 ALOX5APP20292 161 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 OPRL1P41146 370 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 PPOXP50336 477 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 PRKXP51817 358 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 GALK2Q01415 458 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 EIF2B1Q14232 305 aaKnown RBP7.85□□□□□ -1.15
VPS35-206ENST00000565228 GGTLC2Q14390 218 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 LRRC36Q1X8D7 754 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 CLEC12BQ2HXU8 276 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 SHEQ5VZ18 495 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 LAIR2Q6ISS4 152 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 PRSS57Q6UWY2 283 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 MEPCEQ7L2J0 689 aaKnown RBP7.85□□□□□ -1.15
VPS35-206ENST00000565228 OR1J2Q8NGS2 313 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 OR6N2Q8NGY6 317 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 OR2AE1Q8NHA4 323 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 OTOSQ8NHW6 89 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 SYNPRQ8TBG9 265 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 RNF133Q8WVZ7 376 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 CMBLQ96DG6 245 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 HRASLS5Q96KN8 279 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 VRK1Q99986 396 aaPredicted RBP7.85□□□□□ -1.15
VPS35-206ENST00000565228 HDHD2Q9H0R4 259 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 MSL2Q9HCI7 577 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 FAIMQ9NVQ4 179 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 SLCO1C1Q9NYB5 712 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 DNAJC27Q9NZQ0 273 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 DYSFO75923 2080 aa7.85□□□□□ -1.15
VPS35-206ENST00000565228 RNF223E7ERA6 249 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 C3orf80F5H4A9 247 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 H0YL77 283 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 CASQ2O14958 399 aaPredicted RBP7.84□□□□□ -1.15
VPS35-206ENST00000565228 PRODHO43272 600 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 TMCC2O75069 709 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 ENTPD6O75354 484 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 SRSF10O75494 262 aaKnown RBP7.84□□□□□ -1.15
VPS35-206ENST00000565228 PNPP00491 289 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 PTHP01270 115 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 ZNF823P16415 610 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 SELEP16581 610 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 KITLGP21583 273 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 GUCA1AP43080 201 aaPredicted RBP7.84□□□□□ -1.15
VPS35-206ENST00000565228 RAD52P43351 418 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 EVX1P49640 407 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 EFNA4P52798 201 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 SNRPD2P62316 118 aaKnown RBP7.84□□□□□ -1.15
VPS35-206ENST00000565228 ZNF92Q03936 586 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 GK2Q14410 553 aaPredicted RBP7.84□□□□□ -1.15
VPS35-206ENST00000565228 GLYATL3Q5SZD4 288 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 OGFRL1Q5TC84 451 aaPredicted RBP7.84□□□□□ -1.15
VPS35-206ENST00000565228 NXNL2Q5VZ03 156 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 OR2T2Q6IF00 324 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 LRRN1Q6UXK5 716 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 PLEKHG7Q6ZR37 379 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 ENTHD1Q8IYW4 607 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 ALDH16A1Q8IZ83 802 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 OR5AS1Q8N127 324 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 GALNT4Q8N4A0 578 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 C10orf105Q8TEF2 133 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 LYZL4Q96KX0 146 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 ZNF649Q9BS31 505 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 CDADC1Q9BWV3 514 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 BCL2L14Q9BZR8 327 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms