RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 OR4Q3Q8NH05 313 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 ITLN1Q8WWA0 313 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 RAB39BQ96DA2 213 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 TIMD4Q96H15 378 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 SLC30A2Q9BRI3 323 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 RBM4Q9BWF3 364 aaKnown RBP12.53□□□□□ -0.4
CLN3-213ENST00000565047 DGCR6LQ9BY27 220 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 C1orf21Q9H246 121 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 GCM1Q9NP62 436 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 PTTG3PQ9NZH4 202 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 OPN4Q9UHM6 478 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 POLR3KQ9Y2Y1 108 aaPredicted RBP12.53□□□□□ -0.4
CLN3-213ENST00000565047 IQCF6A8MYZ5 107 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 H0YL77 283 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 CCNB2O95067 398 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 NOS3P29474 1203 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 SRP14P37108 136 aaKnown RBP12.52□□□□□ -0.41
CLN3-213ENST00000565047 CENPAP49450 140 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 TUSC1Q2TAM9 212 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 SLC36A3Q495N2 470 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 OR2T5Q6IEZ7 315 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 FAHD2BQ6P2I3 314 aaPredicted RBP12.52□□□□□ -0.41
CLN3-213ENST00000565047 CD300LDQ6UXZ3 194 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 DHFR2Q86XF0 187 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 OR5AS1Q8N127 324 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 CYB561A3Q8NBI2 242 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 AQP11Q8NBQ7 271 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 SLC37A3Q8NCC5 494 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 OR5L1Q8NGL2 311 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 OR2T29Q8NH02 315 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 ASB9Q96DX5 294 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 FAHD2AQ96GK7 314 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 CLPTM1LQ96KA5 538 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 OR2V2Q96R30 315 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 ATF6BQ99941 703 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 METTL17Q9H7H0 456 aaPredicted RBP12.52□□□□□ -0.41
CLN3-213ENST00000565047 DDX28Q9NUL7 540 aaKnown RBP12.52□□□□□ -0.41
CLN3-213ENST00000565047 KCNG2Q9UJ96 466 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 METRNQ9UJH8 293 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 PRPF19Q9UMS4 504 aaKnown RBP12.52□□□□□ -0.41
CLN3-213ENST00000565047 POLR1DQ9Y2S0 133 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 DYSFO75923 2080 aa12.52□□□□□ -0.41
CLN3-213ENST00000565047 PPIAL4EA0A075B759 164 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 LOC105371242A0A075B767 164 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 PPIAL4CA0A0B4J2A2 164 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 F5H0A9 414 aaPredicted RBP12.51□□□□□ -0.41
CLN3-213ENST00000565047 PPIAL4DF5H284 164 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 TMEM178BH3BS89 294 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 TCF21O43680 179 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 VENTXO95231 258 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 FSHBP01225 129 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 PPIAL4FP0DN26 164 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 TNFRSF1AP19438 455 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 PYCR1P32322 319 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 PMELP40967 661 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 RPS27P42677 84 aaKnown RBP12.51□□□□□ -0.41
CLN3-213ENST00000565047 MMP16P51512 607 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 TRAP1Q12931 704 aaKnown RBP12.51□□□□□ -0.41
CLN3-213ENST00000565047 ECH1Q13011 328 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 GK2Q14410 553 aaPredicted RBP12.51□□□□□ -0.41
CLN3-213ENST00000565047 ZMYND11Q15326 602 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 TMEM155Q4W5P6 130 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 ADGRG5Q8IZF4 528 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 CCDC197Q8NCU1 140 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 SEMA6DQ8NFY4 1073 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 MEGF10Q96KG7 1140 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 PITX2Q99697 317 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 GAL3ST1Q99999 423 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 WDR76Q9H967 626 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 PPP1R3CQ9UQK1 317 aa12.51□□□□□ -0.41
CLN3-213ENST00000565047 ARHGAP32A7KAX9 2087 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 A0A0G2JMP0 313 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 A0A0X1KG70 313 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 C5orf63A6NC05 138 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 F5H5K5 113 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 TRAPPC2LH3BP13 241 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 J3QLI3 93 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 SBK2P0C263 348 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 TNFSF4P23510 183 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 SLC6A9P48067 706 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 SLC25A1P53007 311 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 MAB21L1Q13394 359 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 CRMP1Q14194 572 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 TEX30Q5JUR7 227 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 LINC01590Q5TEZ4 76 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 SLC27A4Q6P1M0 643 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 OR4M2Q8NGB6 313 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 OR10AD1Q8NGE0 317 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 OR52L1Q8NGH7 329 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 OR13G1Q8NGZ3 307 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 ZNF582Q96NG8 517 aaPredicted RBP12.5□□□□□ -0.41
CLN3-213ENST00000565047 NIPSNAP1Q9BPW8 284 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 TSSK6Q9BXA6 273 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 PATZ1Q9HBE1 687 aaKnown RBP12.5□□□□□ -0.41
CLN3-213ENST00000565047 MMP26Q9NRE1 261 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 U3KQV3 271 aa12.5□□□□□ -0.41
CLN3-213ENST00000565047 A0A0A6YYJ9 748 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 TVP23AA6NH52 213 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 SURF4O15260 269 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 FSTL3O95633 263 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms