RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 GLS2Q9UI32 602 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 PLEKHA6Q9Y2H5 1048 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 TP53BP1Q12888 1972 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-222ENST00000555774 IGHV3-20A0A0C4DH32 117 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 OR14I1A6ND48 311 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 MBTPS2O43462 519 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 OR2F2O95006 317 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 FCER2P06734 321 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 ZNF28P17035 718 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 RAB3AP20336 220 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 ZNF41P51814 821 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-222ENST00000555774 BIDP55957 195 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 ACY1Q03154 408 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 OR2F1Q13607 317 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 OR10K2Q6IF99 312 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 LYG2Q86SG7 212 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 KCNRGQ8N5I3 272 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 ZBTB8AQ96BR9 441 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 NPAS1Q99742 590 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 MRPL13Q9BYD1 178 aaKnown RBP12.02□□□□□ -0.49
SHMT2-222ENST00000555774 COMMD9Q9P000 198 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 CA14Q9ULX7 337 aa12.02□□□□□ -0.49
SHMT2-222ENST00000555774 LMX1BO60663 402 aa12.01□□□□□ -0.49
SHMT2-222ENST00000555774 ZBTB25P24278 435 aa12.01□□□□□ -0.49
SHMT2-222ENST00000555774 CLDN6P56747 220 aa12.01□□□□□ -0.49
SHMT2-222ENST00000555774 SCGB2B2Q4G0G5 96 aa12.01□□□□□ -0.49
SHMT2-222ENST00000555774 CORO6Q6QEF8 472 aa12.01□□□□□ -0.49
SHMT2-222ENST00000555774 ARSKQ6UWY0 536 aa12.01□□□□□ -0.49
SHMT2-222ENST00000555774 ZNF546Q86UE3 836 aa12.01□□□□□ -0.49
SHMT2-222ENST00000555774 WDFY1Q8IWB7 410 aa12.01□□□□□ -0.49
SHMT2-222ENST00000555774 PAQR4Q8N4S7 273 aaPredicted RBP12.01□□□□□ -0.49
SHMT2-222ENST00000555774 OR1S1Q8NH92 325 aa12.01□□□□□ -0.49
SHMT2-222ENST00000555774 DNASE2BQ8WZ79 361 aa12.01□□□□□ -0.49
SHMT2-222ENST00000555774 LINC00052Q96N35 136 aa12.01□□□□□ -0.49
SHMT2-222ENST00000555774 GAL3ST1Q99999 423 aa12.01□□□□□ -0.49
SHMT2-222ENST00000555774 PPP4R1LQ9P1A2 415 aa12.01□□□□□ -0.49
SHMT2-222ENST00000555774 FARSAQ9Y285 508 aaKnown RBP12.01□□□□□ -0.49
SHMT2-222ENST00000555774 NOP16Q9Y3C1 178 aaKnown RBP12.01□□□□□ -0.49
SHMT2-222ENST00000555774 LOC101059948A0A1B0GTJ6 334 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 OR5H14A6NHG9 310 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 ZNF354AO60765 605 aaPredicted RBP12□□□□□ -0.49
SHMT2-222ENST00000555774 HLA-AP01891 365 aaKnown RBP12□□□□□ -0.49
SHMT2-222ENST00000555774 CHRM2P08172 466 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 HOXD4P09016 255 aaPredicted RBP12□□□□□ -0.49
SHMT2-222ENST00000555774 GNALP38405 381 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 AFF3P51826 1226 aaKnown RBP12□□□□□ -0.49
SHMT2-222ENST00000555774 UNC119Q13432 240 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 CDNFQ49AH0 187 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 SHISA6Q6ZSJ9 500 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 OR2W3Q7Z3T1 314 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 UEVLDQ8IX04 471 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 SLC25A45Q8N413 288 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 BVESQ8NE79 360 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 NOXO1Q8NFA2 376 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 OR52N4Q8NGI2 321 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 B3GAT1Q9P2W7 334 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 VDAC3Q9Y277 283 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 VSIG4Q9Y279 399 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 TRBV11-1A0A0K0K1C0 115 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 WIPF3A6NGB9 483 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 EIF1AYO14602 144 aaKnown RBP12□□□□□ -0.49
SHMT2-222ENST00000555774 GIMD1P0DJR0 217 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 VSIG8P0DPA2 414 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 EIF1AXP47813 144 aaKnown RBP12□□□□□ -0.49
SHMT2-222ENST00000555774 CXADRP78310 365 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 FAM189A2Q15884 450 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 PLPPR5Q32ZL2 321 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 C11orf87Q6NUJ2 197 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 TMEM71Q6P5X7 295 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 C16orf47Q6ZP98 133 aaPredicted RBP12□□□□□ -0.49
SHMT2-222ENST00000555774 ST8SIA2Q92186 375 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 NUDT22Q9BRQ3 303 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 ZMAT3Q9HA38 289 aaKnown RBP12□□□□□ -0.49
SHMT2-222ENST00000555774 KLRF1Q9NZS2 232 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 TNFSF18Q9UNG2 199 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 PCDH15Q96QU1 1955 aa12□□□□□ -0.49
SHMT2-222ENST00000555774 ADAMTS20P59510 1910 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 KANTRA0A1W2PQU2 76 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 C2orf72A6NCS6 295 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 TMEM14DPA8MWL7 114 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 ZNF878C9JN71 531 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 HPP00738 406 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 IGHG1P01857 330 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 CLRN1P58418 232 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 SQSTM1Q13501 440 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 NKAIN1Q4KMZ8 207 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 CHST4Q8NCG5 386 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 OR10S1Q8NGN2 331 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 MITD1Q8WV92 249 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 ADAT3Q96EY9 351 aaPredicted RBP11.99□□□□□ -0.49
SHMT2-222ENST00000555774 PHYHIPLQ96FC7 376 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 PHB2Q99623 299 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 PDCD10Q9BUL8 212 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 SHARPINQ9H0F6 387 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 DNTTIP1Q9H147 329 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 IFT46Q9NQC8 304 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 MYEF2Q9P2K5 600 aaKnown RBP11.99□□□□□ -0.49
SHMT2-222ENST00000555774 D6RAR5 112 aa11.99□□□□□ -0.49
SHMT2-222ENST00000555774 BCAT2O15382 392 aaPredicted RBP11.99□□□□□ -0.49
SHMT2-222ENST00000555774 BCL2L11O43521 198 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms