RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SLC27A4Q6P1M0 643 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 PLBD1Q6P4A8 553 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 FAHD1Q6P587 224 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 COLCA1Q6ZS62 124 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 CPOQ8IVL8 374 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 OR5K1Q8NHB7 308 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 ZMYND19Q96E35 227 aaPredicted RBP9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 AMELYQ99218 206 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 ATF6BQ99941 703 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 OR51V1Q9H2C8 321 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 CHODLQ9H9P2 273 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 ZNF556Q9HAH1 456 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 ATPIF1Q9UII2 106 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 IGHV1-69-2A0A0G2JMI3 117 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 IGHV3-64DA0A0J9YX35 117 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 PLSCR5A0PG75 271 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 H0YL77 283 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 SURF4O15260 269 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 PPIHO43447 177 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 LCATP04180 440 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 TACSTD2P09758 323 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 SLC2A1P11166 492 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 ZNF3P17036 446 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 HOXB6P17509 224 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 KITLGP21583 273 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 PRKXP51817 358 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 PPP2R2BQ00005 443 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 MVKQ03426 396 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 CDK5R2Q13319 367 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 MOGQ16653 247 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 PCK2Q16822 640 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 CYB5R2Q6BCY4 276 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 UNQ6126/PRO20091Q6UXV3 157 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 FBXW12Q6X9E4 464 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 CCDC121Q6ZUS5 278 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 ZNF771Q7L3S4 317 aaPredicted RBP9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 PRIMA1Q86XR5 153 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 ERI1Q8IV48 349 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 BHLHE23Q8NDY6 225 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 ST7LQ8TDW4 575 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 PYDC1Q8WXC3 89 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 APOBEC3DQ96AK3 386 aaPredicted RBP9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 DUS3LQ96G46 650 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 DCLRE1CQ96SD1 692 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 C1QTNF5Q9BXJ0 243 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 SEMA6AQ9H2E6 1030 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 MMADHCQ9H3L0 296 aaPredicted RBP9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 CENPMQ9NSP4 180 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 DECR2Q9NUI1 292 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 NKIRAS2Q9NYR9 191 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 KIF17Q9P2E2 1029 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 KCNG2Q9UJ96 466 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 N6AMT1Q9Y5N5 214 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 ATRQ13535 2644 aa9.83□□□□□ -0.84
CCDC88C-208ENST00000554165 LOC100289279A0A1B0GTE1 492 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 SAC3D1A6NKF1 404 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 A8MV72 311 aaPredicted RBP9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 PRR23D1E9PI22 279 aaPredicted RBP9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 H3BSA7 217 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 SELENOFO60613 162 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 CIB2O75838 187 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 MT-ND5P03915 603 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 PRR23D2P0DMB1 279 aaPredicted RBP9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 ACHEP22303 614 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 GSTT1P30711 240 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 POLR2IP36954 125 aaKnown RBP9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 CRYBB2P43320 205 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 GPR6P46095 362 aaPredicted RBP9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 RGS6P49758 472 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 CRISP1P54107 249 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 MRPS11P82912 194 aaKnown RBP9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 TNFAIP6P98066 277 aaPredicted RBP9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 ECH1Q13011 328 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 EIF2B1Q14232 305 aaKnown RBP9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 KPNB1Q14974 876 aaKnown RBP9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 PCGF3Q3KNV8 242 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 SNAI3Q3KNW1 292 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 IL17RELQ6ZVW7 336 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 DPY19L4Q7Z388 723 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 BCDIN3DQ7Z5W3 292 aaKnown RBP9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 TIGD4Q8IY51 512 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 ZNF540Q8NDQ6 660 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 OR2Z1Q8NG97 314 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 OR6N2Q8NGY6 317 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 OR2AE1Q8NHA4 323 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 CLDND2Q8NHS1 167 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 CCL17Q92583 94 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 SLAMF6Q96DU3 332 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 NRBF2Q96F24 287 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 ELMOD3Q96FG2 381 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 SAP30LQ9HAJ7 183 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 SLC25A19Q9HC21 320 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 PAPOLBQ9NRJ5 636 aaKnown RBP9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 DDX28Q9NUL7 540 aaKnown RBP9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 TVP23BQ9NYZ1 205 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 KLHDC2Q9Y2U9 406 aa9.82□□□□□ -0.84
CCDC88C-208ENST00000554165 KIAA1324LA8MWY0 1029 aaPredicted RBP9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 FAM157AC9JC47 383 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 G3V2T6 193 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 M0R135 149 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms