RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 VHLLQ6RSH7 139 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 ZNF283Q8N7M2 679 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 SNX33Q8WV41 574 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 SGCDQ92629 289 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 AKAP1Q92667 903 aaKnown RBP eCLIP18.28■□□□□ 0.52
VPS29-206ENST00000549578 DCLRE1CQ96SD1 692 aaKnown RBP18.28■□□□□ 0.52
VPS29-206ENST00000549578 FKBP14Q9NWM8 211 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 PAK1IP1Q9NWT1 392 aaPredicted RBP18.28■□□□□ 0.52
VPS29-206ENST00000549578 ERVK13-1Q9NX77 482 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 SCN3BQ9NY72 215 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 EIF3KQ9UBQ5 218 aaKnown RBP18.28■□□□□ 0.52
VPS29-206ENST00000549578 LRRC42Q9Y546 428 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 E7EQL1 145 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 GPRIN2O60269 458 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 CCDC159P0C7I6 412 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 ANOS1P23352 680 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 DCKP27707 260 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 PCSK6P29122 969 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 UCP2P55851 309 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 ERVS71-1P61550 626 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 NKX6-1P78426 367 aaPredicted RBP18.28■□□□□ 0.52
VPS29-206ENST00000549578 ZNF672Q499Z4 452 aaPredicted RBP18.28■□□□□ 0.52
VPS29-206ENST00000549578 ZNF684Q5T5D7 378 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 DEGS2Q6QHC5 323 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 PLEKHG7Q6ZR37 379 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 ABHD4Q8TB40 342 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 TMEM80Q96HE8 168 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 ZNF649Q9BS31 505 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 ALG8Q9BVK2 526 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 DIMT1Q9UNQ2 313 aaKnown RBP18.28■□□□□ 0.52
VPS29-206ENST00000549578 SPEF1Q9Y4P9 236 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 FBN2P35556 2912 aa18.27■□□□□ 0.52
VPS29-206ENST00000549578 ICMTO60725 284 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 KRT8P05787 483 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 LIMS3P0CW19 117 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 LIMS4P0CW20 117 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 PRF1P14222 555 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 CRHBPP24387 322 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 SSTR2P30874 369 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 ETV1P50549 477 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 RIDAP52758 137 aaKnown RBP18.27■□□□□ 0.51
VPS29-206ENST00000549578 TP53I3Q53FA7 332 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 ARL9Q6T311 187 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 DRAM2Q6UX65 266 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 STX19Q8N4C7 294 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 NUP37Q8NFH4 326 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 DOK1Q99704 481 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 BRD7Q9NPI1 651 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 INPP5EQ9NRR6 644 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 CA10Q9NS85 328 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 CISD1Q9NZ45 108 aaKnown RBP18.27■□□□□ 0.51
VPS29-206ENST00000549578 TPRKBQ9Y3C4 175 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 N6AMT1Q9Y5N5 214 aa18.27■□□□□ 0.51
VPS29-206ENST00000549578 ZNF254O75437 659 aa18.26■□□□□ 0.51
VPS29-206ENST00000549578 LCATP04180 440 aa18.26■□□□□ 0.51
VPS29-206ENST00000549578 LCKP06239 509 aa18.26■□□□□ 0.51
VPS29-206ENST00000549578 C21orf33P30042 268 aaPredicted RBP18.26■□□□□ 0.51
VPS29-206ENST00000549578 THBS4P35443 961 aa18.26■□□□□ 0.51
VPS29-206ENST00000549578 RAD52P43351 418 aa18.26■□□□□ 0.51
VPS29-206ENST00000549578 ZNF121P58317 390 aaPredicted RBP18.26■□□□□ 0.51
VPS29-206ENST00000549578 GALEQ14376 348 aa18.26■□□□□ 0.51
VPS29-206ENST00000549578 CDONQ4KMG0 1287 aa18.26■□□□□ 0.51
VPS29-206ENST00000549578 RBM48Q5RL73 367 aaKnown RBP18.26■□□□□ 0.51
VPS29-206ENST00000549578 SPATA46Q5T0L3 261 aa18.26■□□□□ 0.51
VPS29-206ENST00000549578 YIPF7Q8N8F6 280 aa18.26■□□□□ 0.51
VPS29-206ENST00000549578 OR1J1Q8NGS3 322 aa18.26■□□□□ 0.51
VPS29-206ENST00000549578 JAM3Q9BX67 310 aa18.26■□□□□ 0.51
VPS29-206ENST00000549578 TBCCD1Q9NVR7 557 aa18.26■□□□□ 0.51
VPS29-206ENST00000549578 GNG8Q9UK08 70 aa18.26■□□□□ 0.51
VPS29-206ENST00000549578 LRBAP50851 2863 aa18.26■□□□□ 0.51
VPS29-206ENST00000549578 NBPF19A0A087WUL8 3843 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 C5orf63A6NC05 138 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 METTL15A6NJ78 407 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 ANXA2P07355 339 aaKnown RBP18.25■□□□□ 0.51
VPS29-206ENST00000549578 MYL12AP19105 171 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 OR12D2P58182 307 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 PSMA6P60900 246 aaKnown RBP18.25■□□□□ 0.51
VPS29-206ENST00000549578 SLC35A2P78381 396 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 SNAI3Q3KNW1 292 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 COLCA1Q6ZS62 124 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 IPCEF1Q8WWN9 437 aaPredicted RBP18.25■□□□□ 0.51
VPS29-206ENST00000549578 C1QTNF5Q9BXJ0 243 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 BCL2L14Q9BZR8 327 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 POFUT1Q9H488 388 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 NIPAL2Q9H841 368 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 UBTD1Q9HAC8 227 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 ACOXLQ9NUZ1 547 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 CLEC2DQ9UHP7 191 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 FZR1Q9UM11 496 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 STARD10Q9Y365 291 aa18.25■□□□□ 0.51
VPS29-206ENST00000549578 EXOSC1Q9Y3B2 195 aaKnown RBP18.25■□□□□ 0.51
VPS29-206ENST00000549578 SULT1C4O75897 302 aa18.24■□□□□ 0.51
VPS29-206ENST00000549578 RPP14O95059 124 aaKnown RBP18.24■□□□□ 0.51
VPS29-206ENST00000549578 CDK1P06493 297 aa18.24■□□□□ 0.51
VPS29-206ENST00000549578 GLRXP35754 106 aa18.24■□□□□ 0.51
VPS29-206ENST00000549578 RGS6P49758 472 aa18.24■□□□□ 0.51
VPS29-206ENST00000549578 PPP1CBP62140 327 aa18.24■□□□□ 0.51
VPS29-206ENST00000549578 ACTA2P62736 377 aa18.24■□□□□ 0.51
VPS29-206ENST00000549578 ACTG2P63267 376 aa18.24■□□□□ 0.51
VPS29-206ENST00000549578 MSMPQ1L6U9 139 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms