RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 CDC40O60508 579 aaKnown RBP eCLIP2.55□□□□□ -2
VPS29-205ENST00000548539 FOXH1O75593 365 aa2.55□□□□□ -2
VPS29-205ENST00000548539 RP2O75695 350 aa2.55□□□□□ -2
VPS29-205ENST00000548539 OXTP01178 125 aa2.55□□□□□ -2
VPS29-205ENST00000548539 IGHV1-8P0DP01 117 aa2.55□□□□□ -2
VPS29-205ENST00000548539 GZMAP12544 262 aa2.55□□□□□ -2
VPS29-205ENST00000548539 TCP1P17987 556 aaKnown RBP2.55□□□□□ -2
VPS29-205ENST00000548539 TCN2P20062 427 aa2.55□□□□□ -2
VPS29-205ENST00000548539 RAB4AP20338 218 aa2.55□□□□□ -2
VPS29-205ENST00000548539 USF1P22415 310 aaPredicted RBP2.55□□□□□ -2
VPS29-205ENST00000548539 CD82P27701 267 aa2.55□□□□□ -2
VPS29-205ENST00000548539 TNFSF9P41273 254 aa2.55□□□□□ -2
VPS29-205ENST00000548539 MNAT1P51948 309 aa2.55□□□□□ -2
VPS29-205ENST00000548539 PRR3P79522 188 aaKnown RBP2.55□□□□□ -2
VPS29-205ENST00000548539 SYCNQ0VAF6 134 aa2.55□□□□□ -2
VPS29-205ENST00000548539 HADHQ16836 314 aaKnown RBP2.55□□□□□ -2
VPS29-205ENST00000548539 FAM83EQ2M2I3 478 aa2.55□□□□□ -2
VPS29-205ENST00000548539 TFDP3Q5H9I0 405 aa2.55□□□□□ -2
VPS29-205ENST00000548539 FAM78AQ5JUQ0 283 aa2.55□□□□□ -2
VPS29-205ENST00000548539 TMEM205Q6UW68 189 aa2.55□□□□□ -2
VPS29-205ENST00000548539 FAM122BQ7Z309 247 aa2.55□□□□□ -2
VPS29-205ENST00000548539 HORMAD1Q86X24 394 aa2.55□□□□□ -2
VPS29-205ENST00000548539 ZNF321PQ8N8H1 164 aa2.55□□□□□ -2
VPS29-205ENST00000548539 C11orf72Q8NBR9 251 aa2.55□□□□□ -2
VPS29-205ENST00000548539 OR11H7Q8NGC8 314 aa2.55□□□□□ -2
VPS29-205ENST00000548539 OR6Q1Q8NGQ2 317 aa2.55□□□□□ -2
VPS29-205ENST00000548539 SYNPRQ8TBG9 265 aa2.55□□□□□ -2
VPS29-205ENST00000548539 RPEQ96AT9 228 aa2.55□□□□□ -2
VPS29-205ENST00000548539 NRBF2Q96F24 287 aa2.55□□□□□ -2
VPS29-205ENST00000548539 CERS2Q96G23 380 aa2.55□□□□□ -2
VPS29-205ENST00000548539 RNF145Q96MT1 663 aa2.55□□□□□ -2
VPS29-205ENST00000548539 NDFIP1Q9BT67 221 aa2.55□□□□□ -2
VPS29-205ENST00000548539 OR2AG1Q9H205 316 aa2.55□□□□□ -2
VPS29-205ENST00000548539 BLZF1Q9H2G9 400 aa2.55□□□□□ -2
VPS29-205ENST00000548539 UBE2ZQ9H832 354 aaPredicted RBP2.55□□□□□ -2
VPS29-205ENST00000548539 PATZ1Q9HBE1 687 aaKnown RBP2.55□□□□□ -2
VPS29-205ENST00000548539 DDX19BQ9UMR2 479 aa2.55□□□□□ -2
VPS29-205ENST00000548539 SAR1BQ9Y6B6 198 aa2.55□□□□□ -2
VPS29-205ENST00000548539 ARHGAP21Q5T5U3 1957 aa2.54□□□□□ -2
VPS29-205ENST00000548539 A0A1W2PRD5 423 aa2.54□□□□□ -2
VPS29-205ENST00000548539 MAGEB4O15481 346 aaPredicted RBP2.54□□□□□ -2
VPS29-205ENST00000548539 NMT2O60551 498 aa2.54□□□□□ -2
VPS29-205ENST00000548539 MED6O75586 246 aa2.54□□□□□ -2
VPS29-205ENST00000548539 CTDNEP1O95476 244 aa2.54□□□□□ -2
VPS29-205ENST00000548539 TDP2O95551 362 aa2.54□□□□□ -2
VPS29-205ENST00000548539 HPRT1P00492 218 aa2.54□□□□□ -2
VPS29-205ENST00000548539 ZNF32P17041 273 aa2.54□□□□□ -2
VPS29-205ENST00000548539 DTYMKP23919 212 aa2.54□□□□□ -2
VPS29-205ENST00000548539 GPR1P46091 355 aa2.54□□□□□ -2
VPS29-205ENST00000548539 SLC11A1P49279 550 aa2.54□□□□□ -2
VPS29-205ENST00000548539 ESRRGP62508 458 aa2.54□□□□□ -2
VPS29-205ENST00000548539 CACNG7P62955 275 aa2.54□□□□□ -2
VPS29-205ENST00000548539 ZNF33AQ06730 810 aa2.54□□□□□ -2
VPS29-205ENST00000548539 SPAG1Q07617 926 aa2.54□□□□□ -2
VPS29-205ENST00000548539 EBI3Q14213 229 aa2.54□□□□□ -2
VPS29-205ENST00000548539 NCF4Q15080 339 aa2.54□□□□□ -2
VPS29-205ENST00000548539 IRF4Q15306 451 aa2.54□□□□□ -2
VPS29-205ENST00000548539 SMUG1Q53HV7 270 aa2.54□□□□□ -2
VPS29-205ENST00000548539 GCSAMLQ5JQS6 135 aa2.54□□□□□ -2
VPS29-205ENST00000548539 ZNF691Q5VV52 312 aa2.54□□□□□ -2
VPS29-205ENST00000548539 ADNP2Q6IQ32 1131 aa2.54□□□□□ -2
VPS29-205ENST00000548539 APRG1Q8IVJ8 170 aa2.54□□□□□ -2
VPS29-205ENST00000548539 NKAIN4Q8IVV8 208 aa2.54□□□□□ -2
VPS29-205ENST00000548539 CMTM8Q8IZV2 173 aa2.54□□□□□ -2
VPS29-205ENST00000548539 VKORC1L1Q8N0U8 176 aa2.54□□□□□ -2
VPS29-205ENST00000548539 INO80EQ8NBZ0 244 aaPredicted RBP2.54□□□□□ -2
VPS29-205ENST00000548539 PROKR2Q8NFJ6 384 aa2.54□□□□□ -2
VPS29-205ENST00000548539 RAB1CQ92928 201 aa2.54□□□□□ -2
VPS29-205ENST00000548539 STARD4Q96DR4 205 aa2.54□□□□□ -2
VPS29-205ENST00000548539 NEURL3Q96EH8 262 aa2.54□□□□□ -2
VPS29-205ENST00000548539 OPALINQ96PE5 141 aa2.54□□□□□ -2
VPS29-205ENST00000548539 BCL7BQ9BQE9 202 aa2.54□□□□□ -2
VPS29-205ENST00000548539 NAA50Q9GZZ1 169 aaKnown RBP2.54□□□□□ -2
VPS29-205ENST00000548539 MYOZ2Q9NPC6 264 aa2.54□□□□□ -2
VPS29-205ENST00000548539 ZC4H2Q9NQZ6 224 aa2.54□□□□□ -2
VPS29-205ENST00000548539 TSSC4Q9Y5U2 329 aaPredicted RBP2.54□□□□□ -2
VPS29-205ENST00000548539 GPATCH8Q9UKJ3 1502 aaKnown RBP2.53□□□□□ -2
VPS29-205ENST00000548539 ZNFX1Q9P2E3 1918 aaKnown RBP2.53□□□□□ -2
VPS29-205ENST00000548539 IGKV2D-24A0A075B6R9 120 aa2.53□□□□□ -2
VPS29-205ENST00000548539 SMIM26A0A096LP01 95 aa2.53□□□□□ -2
VPS29-205ENST00000548539 IGKV1-8A0A0C4DH67 115 aa2.53□□□□□ -2
VPS29-205ENST00000548539 RAD51BO15315 384 aa2.53□□□□□ -2
VPS29-205ENST00000548539 ADRA2AP08913 450 aa2.53□□□□□ -2
VPS29-205ENST00000548539 PGA5P0DJD9 388 aa2.53□□□□□ -2
VPS29-205ENST00000548539 CD37P11049 281 aa2.53□□□□□ -2
VPS29-205ENST00000548539 GABRG2P18507 467 aa2.53□□□□□ -2
VPS29-205ENST00000548539 PEX19P40855 299 aa2.53□□□□□ -2
VPS29-205ENST00000548539 KIR3DL2P43630 455 aa2.53□□□□□ -2
VPS29-205ENST00000548539 ZNF121P58317 390 aaPredicted RBP2.53□□□□□ -2
VPS29-205ENST00000548539 DNAJC3Q13217 504 aa2.53□□□□□ -2
VPS29-205ENST00000548539 RBMY1FQ15415 496 aaKnown RBP2.53□□□□□ -2
VPS29-205ENST00000548539 TSC22D1Q15714 1073 aa2.53□□□□□ -2
VPS29-205ENST00000548539 UBE2SQ16763 222 aa2.53□□□□□ -2
VPS29-205ENST00000548539 RPEL1Q2QD12 228 aa2.53□□□□□ -2
VPS29-205ENST00000548539 KLHL40Q2TBA0 621 aa2.53□□□□□ -2
VPS29-205ENST00000548539 LINC00483Q53H64 154 aa2.53□□□□□ -2
VPS29-205ENST00000548539 ZNF695Q8IW36 515 aa2.53□□□□□ -2
VPS29-205ENST00000548539 SAXO1Q8IYX7 474 aa2.53□□□□□ -2
VPS29-205ENST00000548539 MYOCDQ8IZQ8 938 aa2.53□□□□□ -2
VPS29-205ENST00000548539 TRAM1L1Q8N609 369 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms