RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	ADAM10	O14672	748 aa		11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	IL2RA	P01589	272 aa		11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	TTR	P02766	147 aa		11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	FOSL2	P15408	326 aa		11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	FBXW4	P57775	412 aa		11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	DHRS2	Q13268	280 aa		11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	CPEB2	Q7Z5Q1	589 aa	Known RBP	11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	TMED4	Q7Z7H5	227 aa		11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	TRAPPC6B	Q86SZ2	158 aa		11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	ARRDC1	Q8N5I2	433 aa		11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	SPERT	Q8NA61	448 aa		11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	THAP6	Q8TBB0	222 aa		11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	MITD1	Q8WV92	249 aa		11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	DVL3	Q92997	716 aa	Predicted RBP	11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	URM1	Q9BTM9	101 aa	Known RBP	11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	METTL7A	Q9H8H3	244 aa		11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	POLR1D	Q9Y2S0	133 aa		11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	CHD7	Q9P2D1	2997 aa		11.62	□□□□□ -0.55
CPSF7-223	ENST00000544669	TRBV11-1	A0A0K0K1C0	115 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	ZNF726	A6NNF4	738 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669		A8MXK9	166 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	RAD1	O60671	282 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	MPZL1	O95297	269 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	HLA-A	P01891	365 aa	Known RBP	11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	FCER2	P06734	321 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	HLA-DOB	P13765	273 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	MPG	P29372	298 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	ZNF93	P35789	620 aa	Predicted RBP	11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	GABRE	P78334	506 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	SLC35A1	P78382	337 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	SORD	Q00796	357 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	FOXF1	Q12946	379 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	SCGB2B2	Q4G0G5	96 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	C11orf87	Q6NUJ2	197 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	ACOT7L	Q6ZUV0	252 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	DOK3	Q7L591	496 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	FJX1	Q86VR8	437 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	TMEM17	Q86X19	198 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	LSR	Q86X29	649 aa	Predicted RBP	11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	TDH	Q8IZJ6	230 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	SLC25A45	Q8N413	288 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	INO80E	Q8NBZ0	244 aa	Predicted RBP	11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	CHST4	Q8NCG5	386 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	NOXO1	Q8NFA2	376 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	OR10R2	Q8NGX6	335 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	ARL5B	Q96KC2	179 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	FOXN4	Q96NZ1	517 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	TINAGL1	Q9GZM7	467 aa	Predicted RBP	11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	SLC26A1	Q9H2B4	701 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	CNTD2	Q9H8S5	307 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	CA14	Q9ULX7	337 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	FARSA	Q9Y285	508 aa	Known RBP	11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	WIF1	Q9Y5W5	379 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669	CHD9	Q3L8U1	2897 aa		11.61	□□□□□ -0.55
CPSF7-223	ENST00000544669		A0A0B4J2A0	478 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	OR14I1	A6ND48	311 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	MEIS3P1	A6NDR6	274 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669		D6RAR5	112 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669		H3BSH0	61 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	SIX6	O95475	246 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	ATXN8OS	P0DMR3	200 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	STAR	P49675	285 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	EFNA3	P52797	238 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	CLDN6	P56747	220 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	IL13RA1	P78552	427 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	PPA1	Q15181	289 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	NR0B2	Q15466	257 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	PLPPR5	Q32ZL2	321 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	PLEKHN1	Q494U1	663 aa	Predicted RBP	11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	PRAMEF17	Q5VTA0	474 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	TMEM81	Q6P7N7	255 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	BIVM	Q86UB2	503 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	LINC00346	Q8IVM7	164 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	GALNT16	Q8N428	558 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	PNLDC1	Q8NA58	520 aa	Known RBP	11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	OR56B1	Q8NGI3	324 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	OR4D6	Q8NGJ1	314 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	OR51A2	Q8NGJ7	313 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	COQ8A	Q8NI60	647 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	PPP1R14A	Q96A00	147 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	C10orf35	Q96D05	121 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	MYOT	Q9UBF9	498 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	SHPK	Q9UHJ6	478 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	TMEM14DP	A8MWL7	114 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	NUDT19	A8MXV4	375 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669		M0QYG6	137 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	SCRG1	O75711	98 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	STK17B	O94768	372 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	VAMP5	O95183	116 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	DUS4L	O95620	317 aa	Known RBP	11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	WDPCP	O95876	746 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	FGF2	P09038	288 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	ZNF43	P17038	809 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	NAT1	P18440	290 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	CCL1	P22362	96 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	ZBTB25	P24278	435 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	CTSS	P25774	331 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	CX3CR1	P49238	355 aa		11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	LSM6	P62312	80 aa	Known RBP	11.6	□□□□□ -0.55
CPSF7-223	ENST00000544669	QRFP	P83859	136 aa		11.6	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms