RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 A0A1W2PRS3 328 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 KIR3DP1A8MWS1 328 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 ZNF43P17038 809 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 PHYHD1Q5SRE7 291 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 KLHL24Q6TFL4 600 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 PHYHIPQ92561 330 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 MSANTD3Q96H12 275 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 GPR137Q96N19 417 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 RBM24Q9BX46 236 aaKnown RBP15.01□□□□□ -0.01
USP28-208ENST00000540438 AKAP7Q9P0M2 348 aaPredicted RBP15.01□□□□□ -0.01
USP28-208ENST00000540438 OR5H15A6NDH6 313 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 L7N2F9 121 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 SPDEFO95238 335 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 MPIG6BO95866 241 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 PMP2P02689 132 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 BAMBIQ13145 260 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 C3orf33Q6P1S2 294 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 LIX1LQ8IVB5 337 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 ARL6Q9H0F7 186 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 OR3A4PP47883 348 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 UNC119Q13432 240 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 CDCP2Q5VXM1 449 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 AWAT2Q6E213 333 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 KCTD9Q7L273 389 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 YRDCQ86U90 279 aaKnown RBP15.01□□□□□ -0.01
USP28-208ENST00000540438 ZNF283Q8N7M2 679 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 RELL2Q8NC24 303 aaPredicted RBP15.01□□□□□ -0.01
USP28-208ENST00000540438 ASB17Q8WXJ9 295 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 GPER1Q99527 375 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 GPR84Q9NQS5 396 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 PLEKHA6Q9Y2H5 1048 aa15.01□□□□□ -0.01
USP28-208ENST00000540438 CD1AP06126 327 aa15□□□□□ -0.01
USP28-208ENST00000540438 AKR1C4P17516 323 aa15□□□□□ -0.01
USP28-208ENST00000540438 VAMP1P23763 118 aa15□□□□□ -0.01
USP28-208ENST00000540438 OTX2P32243 289 aa15□□□□□ -0.01
USP28-208ENST00000540438 ZNF121P58317 390 aaPredicted RBP15□□□□□ -0.01
USP28-208ENST00000540438 OPCMLQ14982 345 aa15□□□□□ -0.01
USP28-208ENST00000540438 TMEM81Q6P7N7 255 aa15□□□□□ -0.01
USP28-208ENST00000540438 BAIAP2L2Q6UXY1 529 aa15□□□□□ -0.01
USP28-208ENST00000540438 RFPL4BQ6ZWI9 263 aa15□□□□□ -0.01
USP28-208ENST00000540438 BPIFB2Q8N4F0 458 aa15□□□□□ -0.01
USP28-208ENST00000540438 MFSD8Q8NHS3 518 aa15□□□□□ -0.01
USP28-208ENST00000540438 NPDC1Q9NQX5 325 aaPredicted RBP15□□□□□ -0.01
USP28-208ENST00000540438 PRR14LQ5THK1 2151 aa15□□□□□ -0.01
USP28-208ENST00000540438 LGALS8O00214 317 aa15□□□□□ -0.01
USP28-208ENST00000540438 IGF2P01344 180 aa15□□□□□ -0.01
USP28-208ENST00000540438 TPOP07202 933 aa15□□□□□ -0.01
USP28-208ENST00000540438 AVPR2P30518 371 aa15□□□□□ -0.01
USP28-208ENST00000540438 APOBEC1P41238 236 aaKnown RBP15□□□□□ -0.01
USP28-208ENST00000540438 CXADRP78310 365 aa15□□□□□ -0.01
USP28-208ENST00000540438 ROM1Q03395 351 aa15□□□□□ -0.01
USP28-208ENST00000540438 FJX1Q86VR8 437 aa15□□□□□ -0.01
USP28-208ENST00000540438 TMEM156Q8N614 296 aa15□□□□□ -0.01
USP28-208ENST00000540438 OR6N1Q8NGY5 312 aa15□□□□□ -0.01
USP28-208ENST00000540438 TMEM41AQ96HV5 264 aa15□□□□□ -0.01
USP28-208ENST00000540438 CCNL2Q96S94 520 aaPredicted RBP15□□□□□ -0.01
USP28-208ENST00000540438 ACTR6Q9GZN1 396 aa15□□□□□ -0.01
USP28-208ENST00000540438 PLEKHA1Q9HB21 404 aa15□□□□□ -0.01
USP28-208ENST00000540438 ZNF224Q9NZL3 707 aa15□□□□□ -0.01
USP28-208ENST00000540438 MED13Q9UHV7 2174 aa15□□□□□ -0.01
USP28-208ENST00000540438 A0A1B0GUH1 482 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 ZSCAN5BA6NJL1 495 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 CYB5AP00167 134 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 HCKP08631 526 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 AKAIN1P0CW23 69 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 DAP3P51398 398 aaKnown RBP14.99□□□□□ -0.01
USP28-208ENST00000540438 P2RX3P56373 397 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 RBMS2Q15434 407 aaKnown RBP14.99□□□□□ -0.01
USP28-208ENST00000540438 TRIM61Q5EBN2 209 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 TOR2AQ5JU69 321 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 FAM74A1Q5RGS3 127 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 C9orf135Q5VTT2 229 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 RABEPKQ7Z6M1 372 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 TRAPPC6BQ86SZ2 158 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 PAQR4Q8N4S7 273 aaPredicted RBP14.99□□□□□ -0.01
USP28-208ENST00000540438 CLEC1AQ8NC01 280 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 OR2AJ1Q8NGZ0 328 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 SPACA9Q96E40 222 aaPredicted RBP14.99□□□□□ -0.01
USP28-208ENST00000540438 CXorf58Q96LI9 332 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 ETV7Q9Y603 341 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 TECTAO75443 2155 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 OR6C76A6NM76 312 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 ARHGDIBP52566 201 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 ZNF626Q68DY1 528 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 BRICD5Q6PL45 260 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 COMMD7Q86VX2 200 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 RADILQ96JH8 1075 aa14.99□□□□□ -0.01
USP28-208ENST00000540438 A0A1B0GTQ1 180 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 ZNF726A6NNF4 738 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 PHYHO14832 338 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 SOCS1O15524 211 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 PDCD1Q15116 288 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 HACD4Q5VWC8 232 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 C1QL2Q7Z5L3 287 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 SORCS2Q96PQ0 1159 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 CHRNA10Q9GZZ6 450 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 C12orf10Q9HB07 376 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 FAM206AQ9NX38 181 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 ZNF736B4DX44 427 aaPredicted RBP14.98□□□□□ -0.01
USP28-208ENST00000540438 SDCBPO00560 298 aaPredicted RBP14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 281.4 ms