RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 TMEM108Q6UXF1 575 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 SHFQ7M4L6 423 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 SLC35F2Q8IXU6 374 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 LRRC18Q8N456 261 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 OR10H4Q8NGA5 316 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 NMD3Q96D46 503 aaKnown RBP10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 YTHDF1Q9BYJ9 559 aaKnown RBP10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 BPESC1Q9GZL8 116 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 CCDC90BQ9GZT6 254 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 CCNB1IP1Q9NPC3 277 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 TMEM38BQ9NVV0 291 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 TAS2R16Q9NYV7 291 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 PMF1-BGLAPU3KQ54 211 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 C12orf71A8MTZ7 269 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 ZNF670-ZNF695F2Z2N8 137 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 SELENOFO60613 162 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 LILRA1O75019 489 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 RAD51DO75771 328 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 RAB36O95755 333 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 OR8G3PP0DMU2 310 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 MYL12AP19105 171 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 ZNF83P51522 516 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 UBE2NP61088 152 aaKnown RBP10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 ACTC1P68032 377 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 ACTA1P68133 377 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 MRPS34P82930 218 aaKnown RBP10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 RAB40BQ12829 278 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 AWAT1Q58HT5 328 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 LINC01590Q5TEZ4 76 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 LINGO2Q7L985 606 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 SLC16A14Q7RTX9 510 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 SLC16A9Q7RTY1 509 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 PEG10Q86TG7 708 aaKnown RBP10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 ZNF433Q8N7K0 673 aaPredicted RBP10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 SLC26A10Q8NG04 563 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 ZNRF4Q8WWF5 429 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 IPCEF1Q8WWN9 437 aaPredicted RBP10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 C11orf40Q8WZ69 217 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 ZNF837Q96EG3 531 aaPredicted RBP10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 MRPL48Q96GC5 212 aaKnown RBP10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 NR1H4Q96RI1 486 aaPredicted RBP10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 MYCBPQ99417 103 aaPredicted RBP10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 COPS4Q9BT78 406 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 RNF121Q9H920 327 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 SIAEQ9HAT2 523 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 EMC7Q9NPA0 242 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 POLE4Q9NR33 117 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 PLCXD1Q9NUJ7 323 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 HAO2Q9NYQ3 351 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 CNOT2Q9NZN8 540 aaKnown RBP10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 LAMP5Q9UJQ1 280 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 POU2F3Q9UKI9 436 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 PCDHGB5Q9Y5G0 923 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 SNX5Q9Y5X3 404 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 SLC25A15Q9Y619 301 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 TMEM14AQ9Y6G1 99 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 COMMD3-BMI1R4GMX3 469 aa10.75□□□□□ -0.69
CLSTN3-208ENST00000538933 A0A096LPE4 126 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 A0A1W2PPZ6 126 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 ZNF593O00488 134 aaPredicted RBP10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 PHYHO14832 338 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 MPZL1O95297 269 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 TACSTD2P09758 323 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 SBK2P0C263 348 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 GAAP10253 952 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 BMP4P12644 408 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 GIFP27352 417 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 APOBEC3AP31941 199 aaPredicted RBP10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 GABARAPL2P60520 117 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 PCBD1P61457 104 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 ST3GAL4Q11206 333 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 EIF2B1Q14232 305 aaKnown RBP10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 MEP1BQ16820 701 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 SLC36A2Q495M3 483 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 MIDNQ504T8 468 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 OTPQ5XKR4 325 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 OR7E24Q6IFN5 339 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 ANKRD16Q6P6B7 361 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 UGT2A3Q6UWM9 527 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 LYPD4Q6UWN0 246 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 SLC22A24Q8N4F4 322 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 LINC01356Q8N9X3 169 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 OR4F15Q8NGB8 312 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 OR1K1Q8NGR3 316 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 GGHQ92820 318 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 HPS1Q92902 700 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 LGALS12Q96DT0 336 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 TMEM80Q96HE8 168 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 MNTQ99583 582 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 TBX5Q99593 518 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 ZNF747Q9BV97 191 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 YIPF3Q9GZM5 350 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 METTL17Q9H7H0 456 aaPredicted RBP10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 WDR76Q9H967 626 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 ADGRL4Q9HBW9 690 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 MRPL22Q9NWU5 206 aaKnown RBP10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 PSORS1C1Q9UIG5 152 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 KCNG2Q9UJ96 466 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 UGT2A1Q9Y4X1 527 aa10.74□□□□□ -0.69
CLSTN3-208ENST00000538933 DAPL1A0PJW8 107 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms