RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 TAS2R46P59540 309 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 RPS23P62266 143 aaKnown RBP1.65□□□□□ -2.15
CD44-238ENST00000534296 ESRRGP62508 458 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 KDSRQ06136 332 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 DNAJC3Q13217 504 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 DGCR6Q14129 220 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 TFDP2Q14188 446 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 FAM83EQ2M2I3 478 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 ALKBH6Q3KRA9 238 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 ABCA11PQ4W5N1 156 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 HSP90AA4PQ58FG1 418 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 TTC19Q6DKK2 380 aaPredicted RBP1.65□□□□□ -2.15
CD44-238ENST00000534296 ADNP2Q6IQ32 1131 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 RWDD4Q6NW29 188 aaKnown RBP1.65□□□□□ -2.15
CD44-238ENST00000534296 DNAJC24Q6P3W2 148 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 TMPRSS11AQ6ZMR5 421 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 Q6ZR03 302 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 SCD5Q86SK9 330 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 MDP1Q86V88 176 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 WDFY1Q8IWB7 410 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 TMEM256Q8N2U0 113 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 FAM184AQ8NB25 1140 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 OR10G6Q8NH81 332 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 ZNF461Q8TAF7 563 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 RGP1Q92546 391 aaPredicted RBP1.65□□□□□ -2.15
CD44-238ENST00000534296 PTX4Q96A99 478 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 MRGPRFQ96AM1 343 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 FLYWCH2Q96CP2 140 aaKnown RBP1.65□□□□□ -2.15
CD44-238ENST00000534296 RBMXL1Q96E39 390 aaKnown RBP1.65□□□□□ -2.15
CD44-238ENST00000534296 ZNF681Q96N22 645 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 DOK1Q99704 481 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 CHAC1Q9BUX1 264 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 SCRT1Q9BWW7 348 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 UCK2Q9BZX2 261 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 SAV1Q9H4B6 383 aaPredicted RBP1.65□□□□□ -2.15
CD44-238ENST00000534296 TMEM38AQ9H6F2 299 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 AUNIPQ9H7T9 357 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 TMEM27Q9HBJ8 222 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 PXMP2Q9NR77 195 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 AKNAQ7Z591 1439 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 GAKO14976 1311 aa1.65□□□□□ -2.15
CD44-238ENST00000534296 IGLV2-18A0A075B6J9 118 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 A0A1W2PRD5 423 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 ZNF705GA8MUZ8 300 aaPredicted RBP1.64□□□□□ -2.15
CD44-238ENST00000534296 SUPT3HB4E1H0 165 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 SPECC1L-ADORA2AF8WAN1 911 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 GOLGA8TH3BQL2 631 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 PLPP1O14494 284 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 XRCC2O43543 280 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 CHST1O43916 411 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 GATBO75879 557 aaKnown RBP1.64□□□□□ -2.15
CD44-238ENST00000534296 RBBP9O75884 186 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 FLOT1O75955 427 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 PAHP00439 452 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 IFNW1P05000 195 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 CLTAP09496 248 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 TLX1NBP0CAT3 122 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 UBCP0CG48 685 aaKnown RBP1.64□□□□□ -2.15
CD44-238ENST00000534296 RALBP11234 206 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 RAB5AP20339 215 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 GSTM3P21266 225 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 OR1E1P30953 314 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 CCT6AP40227 531 aaKnown RBP1.64□□□□□ -2.15
CD44-238ENST00000534296 SLC1A2P43004 574 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 CRISP1P54107 249 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 AP1S2P56377 157 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 YWHAEP62258 255 aaKnown RBP1.64□□□□□ -2.15
CD44-238ENST00000534296 IFITM3Q01628 133 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 RAD51Q06609 339 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 ZNF33AQ06730 810 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 PPIDQ08752 370 aaKnown RBP1.64□□□□□ -2.15
CD44-238ENST00000534296 SYCNQ0VAF6 134 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 KIR2DS1Q14954 304 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 NCF4Q15080 339 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 PON2Q15165 354 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 ZNF726P1Q15940 193 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 HSDL1Q3SXM5 330 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 MPV17L2Q567V2 206 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 AVPI1Q5T686 147 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 PLCXD3Q63HM9 321 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 SPECC1LQ69YQ0 1117 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 STUMQ69YW2 141 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 ZNF880Q6PDB4 577 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 SHISA6Q6ZSJ9 500 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 UNC93AQ86WB7 457 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 HORMAD1Q86X24 394 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 ZNF695Q8IW36 515 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 KATNAL2Q8IYT4 538 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 VKORC1L1Q8N0U8 176 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 RNF182Q8N6D2 247 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 ZFP41Q8N8Y5 198 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 INO80EQ8NBZ0 244 aaPredicted RBP1.64□□□□□ -2.15
CD44-238ENST00000534296 OR1J4Q8NGS1 313 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 OR13G1Q8NGZ3 307 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 OR8U1Q8NH10 309 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 CA5BP1Q8WTZ4 195 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 C15orf40Q8WUR7 153 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 HAUS1Q96CS2 278 aa1.64□□□□□ -2.15
CD44-238ENST00000534296 NARS2Q96I59 477 aaKnown RBP1.64□□□□□ -2.15
CD44-238ENST00000534296 C9orf72Q96LT7 481 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms