RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 MEGF10Q96KG7 1140 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 SIGLEC11Q96RL6 698 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 NMNAT3Q96T66 252 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 ELAC2Q9BQ52 826 aaKnown RBP12.39□□□□□ -0.43
VPS28-215ENST00000531924 SSBP3Q9BWW4 388 aaPredicted RBP12.39□□□□□ -0.43
VPS28-215ENST00000531924 NSRP1Q9H0G5 558 aaKnown RBP12.39□□□□□ -0.43
VPS28-215ENST00000531924 WDR76Q9H967 626 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 ESM1Q9NQ30 184 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 ZNF446Q9NWS9 450 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 MIOXQ9UGB7 285 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 B9D1Q9UPM9 204 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 POLR3KQ9Y2Y1 108 aaPredicted RBP12.39□□□□□ -0.43
VPS28-215ENST00000531924 LHFPL6Q9Y693 200 aa12.39□□□□□ -0.43
VPS28-215ENST00000531924 IGHV3-64DA0A0J9YX35 117 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 CEACAM18A8MTB9 384 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 F5H5K5 113 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 OR10H3O60404 316 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 ZNF205O95201 554 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 CYB5R3P00387 301 aaPredicted RBP12.38□□□□□ -0.43
VPS28-215ENST00000531924 GNB2P62879 340 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 FOXL1Q12952 345 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 AWAT1Q58HT5 328 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 DOK3Q7L591 496 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 MOGAT3Q86VF5 341 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 OR52E2Q8NGJ4 325 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 OR11L1Q8NGX0 322 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 OR4K13Q8NH42 304 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 ZNF420Q8TAQ5 688 aaPredicted RBP12.38□□□□□ -0.43
VPS28-215ENST00000531924 SPRYD4Q8WW59 207 aaPredicted RBP12.38□□□□□ -0.43
VPS28-215ENST00000531924 DVL3Q92997 716 aaPredicted RBP12.38□□□□□ -0.43
VPS28-215ENST00000531924 PYURFQ96I23 114 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 C7orf34Q96L11 122 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 FAM107BQ9H098 131 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 OR52D1Q9H346 318 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 ZMAT3Q9HA38 289 aaKnown RBP12.38□□□□□ -0.43
VPS28-215ENST00000531924 RPRD1BQ9NQG5 326 aaKnown RBP12.38□□□□□ -0.43
VPS28-215ENST00000531924 ZNF69Q9UC07 566 aa12.38□□□□□ -0.43
VPS28-215ENST00000531924 A8MXK9 166 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 F5H0A9 414 aaPredicted RBP12.37□□□□□ -0.43
VPS28-215ENST00000531924 F5H5P2 479 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 LCATP04180 440 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 WNT2P09544 360 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 ZNF823P16415 610 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 FPR3P25089 353 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 PRDX6P30041 224 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 MTNR1AP48039 350 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 RAD23AP54725 363 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 FXYD6P3P58550 94 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 HIST1H3AP68431 136 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 COX10Q12887 443 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 HIST2H3PS2Q5TEC6 136 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 LRRN1Q6UXK5 716 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 HIST2H3AQ71DI3 136 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 LINC00346Q8IVM7 164 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 OR6V1Q8N148 313 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 FAM86B1Q8N7N1 296 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 OR8B3Q8NGG8 313 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 SLC25A28Q96A46 364 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 NEIL1Q96FI4 390 aaPredicted RBP12.37□□□□□ -0.43
VPS28-215ENST00000531924 DUX5Q96PT3 197 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 OR8B2Q96RD0 313 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 ATF6BQ99941 703 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 SLC30A2Q9BRI3 323 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 GORASP2Q9H8Y8 452 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 MAGEL2Q9UJ55 1249 aa12.37□□□□□ -0.43
VPS28-215ENST00000531924 WNK2Q9Y3S1 2297 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 IGLV1-36A0A0B4J1U3 117 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 IQCF6A8MYZ5 107 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 H0YL77 283 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 DCTN6O00399 190 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 ARPC3O15145 178 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 IDH3BO43837 385 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 FABP3P05413 133 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 HIST1H1CP16403 213 aaKnown RBP12.36□□□□□ -0.43
VPS28-215ENST00000531924 PRTN3P24158 256 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 TPTEP56180 551 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 PGAP1Q75T13 922 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 MRPL21Q7Z2W9 205 aaKnown RBP12.36□□□□□ -0.43
VPS28-215ENST00000531924 KLBQ86Z14 1044 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 SLC26A10Q8NG04 563 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 SPTSSAQ969W0 71 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 DHRS1Q96LJ7 313 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 NSMCE2Q96MF7 247 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 TMEM165Q9HC07 324 aa12.36□□□□□ -0.43
VPS28-215ENST00000531924 NOP16Q9Y3C1 178 aaKnown RBP12.36□□□□□ -0.43
VPS28-215ENST00000531924 DYSFO75923 2080 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 IGHV3OR16-10A0A075B7F0 116 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 DNAJC9-AS1A6NH13 148 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 MLNRO43193 412 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 HLA-DPB1P04440 258 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 HKR1P10072 659 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 CD80P33681 288 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 PITPNBP48739 271 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 PAX8Q06710 450 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 TRAP1Q12931 704 aaKnown RBP12.35□□□□□ -0.43
VPS28-215ENST00000531924 KLF17Q5JT82 389 aaPredicted RBP12.35□□□□□ -0.43
VPS28-215ENST00000531924 SAMD4BQ5PRF9 694 aaKnown RBP12.35□□□□□ -0.43
VPS28-215ENST00000531924 SLC35F1Q5T1Q4 408 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 SLC18B1Q6NT16 456 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 CFAP77Q6ZQR2 320 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms