RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 HIPK1Q86Z02 1210 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 ZFP82Q8N141 532 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 MS4A15Q8N5U1 240 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 OR2L5Q8NG80 312 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 FAM222BQ8WU58 562 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 C22orf15Q8WYQ4 148 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 NEIL2Q969S2 332 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 S100PBPQ96BU1 408 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 FAF2Q96CS3 445 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 CMTM5Q96DZ9 223 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 PRAP1Q96NZ9 151 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 CLCC1Q96S66 551 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 LGMNQ99538 433 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 RBBP8Q99708 897 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 KLHDC3Q9BQ90 382 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 TMEM121Q9BTD3 319 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 APOOQ9BUR5 198 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 CLEC7AQ9BXN2 247 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 BCL2L14Q9BZR8 327 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 CHRNA10Q9GZZ6 450 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 LHX5Q9H2C1 402 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 ZNF696Q9H7X3 374 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 CUTCQ9NTM9 273 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 BABAM2Q9NXR7 383 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 B4GALT7Q9UBV7 327 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 TBX21Q9UL17 535 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 SCML2Q9UQR0 700 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 PDE10AQ9Y233 779 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 MMACHCQ9Y4U1 282 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 WDR81Q562E7 1941 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 MROH7Q68CQ1 1323 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 REV3LO60673 3130 aa3.9□□□□□ -1.78
CD44-220ENST00000525688 LRIT2A6NDA9 550 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 hCG_2039718K7EN88 272 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 SULT1C2O00338 296 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 PPP1R2P9O14990 202 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 SIGLEC5O15389 551 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 RGS16O15492 202 aaPredicted RBP3.9□□□□□ -1.79
CD44-220ENST00000525688 C1orf105O95561 183 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 IGSF6O95976 241 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 TIMP1P01033 207 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 IGLV1-44P01699 117 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 LGALS2P05162 132 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 HBQ1P09105 142 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 NQO1P15559 274 aaKnown RBP3.9□□□□□ -1.79
CD44-220ENST00000525688 FASP25445 335 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 CD79BP40259 229 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 VHLP40337 213 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 OPRL1P41146 370 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 MAGEA3P43357 314 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 RAP1GDS1P52306 607 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 SPCS3P61009 180 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 LSM6P62312 80 aaKnown RBP3.9□□□□□ -1.79
CD44-220ENST00000525688 MRPS22P82650 360 aaKnown RBP3.9□□□□□ -1.79
CD44-220ENST00000525688 CYCSP99999 105 aaKnown RBP3.9□□□□□ -1.79
CD44-220ENST00000525688 CKAP4Q07065 602 aaKnown RBP3.9□□□□□ -1.79
CD44-220ENST00000525688 RGS1Q08116 209 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 ST3GAL3Q11203 375 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 GABRA6Q16445 453 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 ATP6V1FQ16864 119 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 TMEM52BQ4KMG9 183 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 GCSAMLQ5JQS6 135 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 RBM48Q5RL73 367 aaKnown RBP3.9□□□□□ -1.79
CD44-220ENST00000525688 DCAF12Q5T6F0 453 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 SDHAF4Q5VUM1 108 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 RESP18Q5W5W9 173 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 HACD2Q6Y1H2 254 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 USP43Q70EL4 1123 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 AHSA2Q719I0 299 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 ASCL5Q7RTU5 278 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 SMIM15Q7Z3B0 74 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 HSD11B1LQ7Z5J1 315 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 BLIDQ8IZY5 108 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 TMEM251Q8N6I4 163 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 TPRX1Q8N7U7 411 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 OR4D9Q8NGE8 314 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 OR5AK3PQ8NH89 298 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 RNASEH2CQ8TDP1 164 aaKnown RBP3.9□□□□□ -1.79
CD44-220ENST00000525688 ADAMTS16Q8TE57 1224 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 AENQ8WTP8 325 aaKnown RBP3.9□□□□□ -1.79
CD44-220ENST00000525688 SETD7Q8WTS6 366 aaKnown RBP3.9□□□□□ -1.79
CD44-220ENST00000525688 DNASE2BQ8WZ79 361 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 AP3S1Q92572 193 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 MRPL24Q96A35 216 aaKnown RBP3.9□□□□□ -1.79
CD44-220ENST00000525688 DGCR14Q96DF8 476 aaKnown RBP3.9□□□□□ -1.79
CD44-220ENST00000525688 SGTBQ96EQ0 304 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 WDR34Q96EX3 536 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 ITCHQ96J02 903 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 CCDC42Q96M95 316 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 CPXM1Q96SM3 734 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 RAB34Q9BZG1 259 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 SLC22A4Q9H015 551 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 FGF22Q9HCT0 170 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 FGF20Q9NP95 211 aaPredicted RBP3.9□□□□□ -1.79
CD44-220ENST00000525688 BATF3Q9NR55 127 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 NLE1Q9NVX2 485 aaPredicted RBP3.9□□□□□ -1.79
CD44-220ENST00000525688 CYB5R1Q9UHQ9 305 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 EXOSC1Q9Y3B2 195 aaKnown RBP3.9□□□□□ -1.79
CD44-220ENST00000525688 CSNK1G3Q9Y6M4 447 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 LTBP2Q14767 1821 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms