RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 VCX2Q9H322 139 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 PLSCR3Q9NRY6 295 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 HSD17B6O14756 317 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 F13BP05160 661 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 NAT2P11245 290 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 EPXP11678 715 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 PRLHRP49683 370 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 LIMK1P53667 647 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 CDK5R1Q15078 307 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 HLA-DRB5Q30154 266 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 ZNF718Q3SXZ3 478 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 TRMT12Q53H54 448 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 C9orf152Q5JTZ5 239 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 DHRS7BQ6IAN0 325 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 PLPP7Q8NBV4 271 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 ADOQ96SZ5 270 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 IL21Q9HBE4 155 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 DYNLRB1Q9NP97 96 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 C5AR2Q9P296 337 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 A6NCN8 305 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 ZNF840PA6NDX5 716 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 COX6CP09669 75 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 FHITP49789 147 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 SUCLG1P53597 346 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 BSXQ3C1V8 233 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 SEZ6L2Q6UXD5 910 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 NPWQ8N729 165 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 GMPPAQ96IJ6 420 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 OPALINQ96PE5 141 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 SLC17A9Q9BYT1 436 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 SLC45A1Q9Y2W3 748 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 CLEC18AA5D8T8 446 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 GAGE10A6NGK3 116 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 BMI1P35226 326 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 IL10RAQ13651 578 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 ACKR1Q16570 336 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 SLC35G1Q2M3R5 365 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 AFMIDQ63HM1 303 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 LEMD1Q68G75 181 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 PRSS54Q6PEW0 395 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 ZNF383Q8NA42 475 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 CLEC18CQ8NCF0 446 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 DUSP18Q8NEJ0 188 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 MED20Q9H944 212 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 SLCO3A1Q9UIG8 710 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 MMACHCQ9Y4U1 282 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 MYH7BA7E2Y1 1941 aa10.26□□□□□ -0.77
LIMCH1-208ENST00000508501 A0A1W2PNV4 684 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 AQP7P3A6NL99 342 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 OR52A4PA6NMU1 304 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 OR5G3P0C626 314 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 FABP2P12104 132 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 RPL27P61353 136 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 VWA2Q5GFL6 755 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 ETV3LQ6ZN32 361 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 OR4B1Q8NGF8 309 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 OR51H1Q8NH63 302 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 OLIG1Q8TAK6 271 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 IL22RA2Q969J5 263 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 COMMD5Q9GZQ3 224 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 CHST8Q9H2A9 424 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 FOXJ3Q9UPW0 622 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 TRAV34A0A0B4J273 112 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 ENSAO43768 121 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 COX7A2P2O60397 106 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 HTR1DP28221 377 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 FAM3AP98173 230 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 PMCHL1Q16048 86 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 OR1L3Q8NH93 324 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 CSNK1G1Q9HCP0 422 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 IL17BQ9UHF5 180 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 TIMM9Q9Y5J7 89 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 GON4LQ3T8J9 2241 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 LOC102724200A0A096LPH7 203 aaPredicted RBP10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 MBTPS2O43462 519 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 RHBDL1O75783 438 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 CD3DP04234 171 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 CD96P40200 585 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 FOLR3P41439 243 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 OR3A1P47881 315 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 ASCL1P50553 236 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 KCNE4Q8WWG9 221 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 PIK3IP1Q96FE7 263 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 WDR83Q9BRX9 315 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 PLA2G12AQ9BZM1 189 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 KCND3Q9UK17 655 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 DIP2AQ14689 1571 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 TMED7-TICAM2A0A0A6YYA0 188 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 LOC107986453A0A1B0GWG9 222 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 DRGXA6NNA5 263 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 MFNGO00587 321 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 PLSCR1O15162 318 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 ZNF217O75362 1048 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 C1orf105O95561 183 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 CST6Q15828 149 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 C6orf201Q7Z4U5 140 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 ZNF480Q8WV37 535 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 NUDCD2Q8WVJ2 157 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 SLC25A33Q9BSK2 321 aa10.25□□□□□ -0.77
LIMCH1-208ENST00000508501 TMED7Q9Y3B3 224 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms