RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 TPRKBQ9Y3C4 175 aa8.91□□□□□ -0.98
SKA1-204ENST00000488454 SPTAN1Q13813 2472 aaKnown RBP8.91□□□□□ -0.98
SKA1-204ENST00000488454 ADGRG4Q8IZF6 3080 aa8.91□□□□□ -0.98
SKA1-204ENST00000488454 COL12A1Q99715 3063 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 LOC100509620A0A075B734 347 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 A0A1W2PQL4 384 aaPredicted RBP8.9□□□□□ -0.98
SKA1-204ENST00000488454 ATP6V1G2-DDX39BF2Z307 99 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 DENRO43583 198 aaKnown RBP8.9□□□□□ -0.98
SKA1-204ENST00000488454 ZNF254O75437 659 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 RPLP1P05386 114 aaKnown RBP8.9□□□□□ -0.98
SKA1-204ENST00000488454 KRT8P05787 483 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 LCKP06239 509 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 TACSTD2P09758 323 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 PSKH1P11801 424 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 MYL12AP19105 171 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 DCKP27707 260 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 PCSK6P29122 969 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 CALCRP30988 508 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 SLC6A9P48067 706 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 RGS6P49758 472 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 PRKXP51817 358 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 UCP2P55851 309 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 RPS23P62266 143 aaKnown RBP8.9□□□□□ -0.98
SKA1-204ENST00000488454 SPOCK1Q08629 439 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 HIST2H2BCQ6DN03 193 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 VHLLQ6RSH7 139 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 ZNF322Q6U7Q0 402 aaPredicted RBP8.9□□□□□ -0.98
SKA1-204ENST00000488454 LRRN1Q6UXK5 716 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 PLEKHG7Q6ZR37 379 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 MYPOPQ86VE0 399 aaPredicted RBP8.9□□□□□ -0.98
SKA1-204ENST00000488454 ZNF679Q8IYX0 411 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 STX19Q8N4C7 294 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 ZNF283Q8N7M2 679 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 ZNF540Q8NDQ6 660 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 OR52I1Q8NGK6 324 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 OR5L1Q8NGL2 311 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 SLC7A6Q92536 515 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 AKAP1Q92667 903 aaKnown RBP eCLIP8.9□□□□□ -0.98
SKA1-204ENST00000488454 TMEM80Q96HE8 168 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 COG8Q96MW5 612 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 TMEM204Q9BSN7 226 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 BCL2L14Q9BZR8 327 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 PNRC2Q9NPJ4 139 aaKnown RBP8.9□□□□□ -0.98
SKA1-204ENST00000488454 INPP5EQ9NRR6 644 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 PLCXD1Q9NUJ7 323 aa8.9□□□□□ -0.98
SKA1-204ENST00000488454 CISD1Q9NZ45 108 aaKnown RBP8.9□□□□□ -0.98
SKA1-204ENST00000488454 FAM221AA4D161 298 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 SHISA9B4DS77 424 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 PTGES3LE9PB15 166 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 M0R135 149 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 PSMD9O00233 223 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 SULT1C4O75897 302 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 PLAUP00749 431 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 GHRHP01286 108 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 LCATP04180 440 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 ANXA2P07355 339 aaKnown RBP8.89□□□□□ -0.99
SKA1-204ENST00000488454 DBHP09172 617 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 NR4A1P22736 598 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 LOXP28300 417 aaPredicted RBP8.89□□□□□ -0.99
SKA1-204ENST00000488454 OPRL1P41146 370 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 FABP6P51161 128 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 RIDAP52758 137 aaKnown RBP8.89□□□□□ -0.99
SKA1-204ENST00000488454 SELENOVP59797 346 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 ROM1Q03395 351 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 HGFACQ04756 655 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 SNTB2Q13425 540 aaKnown RBP8.89□□□□□ -0.99
SKA1-204ENST00000488454 ZNF672Q499Z4 452 aaPredicted RBP8.89□□□□□ -0.99
SKA1-204ENST00000488454 DRAM2Q6UX65 266 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 FAM220AQ7Z4H9 259 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 KCTD20Q7Z5Y7 419 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 ZNF786Q8N393 782 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 PAQR4Q8N4S7 273 aaPredicted RBP8.89□□□□□ -0.99
SKA1-204ENST00000488454 YIPF7Q8N8F6 280 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 NUP37Q8NFH4 326 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 KBTBD8Q8NFY9 601 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 OR10S1Q8NGN2 331 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 OR1J1Q8NGS3 322 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 ABHD4Q8TB40 342 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 GGHQ92820 318 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 MYDGFQ969H8 173 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 ZNF799Q96GE5 643 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 OR8B4Q96RC9 309 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 AMELYQ99218 206 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 OR51B6Q9H340 312 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 FGF20Q9NP95 211 aaPredicted RBP8.89□□□□□ -0.99
SKA1-204ENST00000488454 FAIMQ9NVQ4 179 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 TBCCD1Q9NVR7 557 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 SLCO1C1Q9NYB5 712 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 CNOT2Q9NZN8 540 aaKnown RBP8.89□□□□□ -0.99
SKA1-204ENST00000488454 PSORS1C1Q9UIG5 152 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 BLOC1S6Q9UL45 172 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 EDARQ9UNE0 448 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 COPS3Q9UNS2 423 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 KLHDC2Q9Y2U9 406 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 N6AMT1Q9Y5N5 214 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 ICE1Q9Y2F5 2266 aa8.89□□□□□ -0.99
SKA1-204ENST00000488454 DOPEY2Q9Y3R5 2298 aa8.88□□□□□ -0.99
SKA1-204ENST00000488454 METTL15A6NJ78 407 aa8.88□□□□□ -0.99
SKA1-204ENST00000488454 J3QRE1 110 aa8.88□□□□□ -0.99
SKA1-204ENST00000488454 SLC1A7O00341 560 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms