RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 CYP51A1Q16850 503 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 DEFB133Q30KQ1 61 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 ATP6AP1LQ52LC2 224 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 NHLRC3Q5JS37 347 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 PHYHD1Q5SRE7 291 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 DCST2Q5T1A1 773 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 ZNF57Q68EA5 555 aaPredicted RBP3.19□□□□□ -1.9
PTCD3-216ENST00000487043 FAM71F2Q6NXP2 309 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 SCIMPQ6UWF3 145 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 TMIGD1Q6UXZ0 262 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 Q6ZPB1 254 aaPredicted RBP3.19□□□□□ -1.9
PTCD3-216ENST00000487043 CCDC121Q6ZUS5 278 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 TMUB2Q71RG4 321 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 WDSUB1Q8N9V3 476 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 OR2L3Q8NG85 312 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 OR5L2Q8NGL0 311 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 OR5D13Q8NGL4 314 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 OR4D5Q8NGN0 318 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 OR1F12Q8NHA8 337 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 SLC37A2Q8TED4 501 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 TRUB1Q8WWH5 349 aaKnown RBP3.19□□□□□ -1.9
PTCD3-216ENST00000487043 PATE1Q8WXA2 126 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 CMTM5Q96DZ9 223 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 CMTM7Q96FZ5 175 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 C9orf85Q96MD7 179 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 PRAP1Q96NZ9 151 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 CATSPER2Q96P56 530 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 AIF1LQ9BQI0 150 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 DPH7Q9BTV6 452 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 SPNS1Q9H2V7 528 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 RHBGQ9H310 441 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 FN3KRPQ9HA64 309 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 LRTM1Q9HBL6 345 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 MRPS30Q9NP92 439 aaKnown RBP3.19□□□□□ -1.9
PTCD3-216ENST00000487043 FANCFQ9NPI8 374 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 SLC17A5Q9NRA2 495 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 UFSP2Q9NUQ7 469 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 NMRK1Q9NWW6 199 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 HRASLS2Q9NWW9 162 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 C1orf109Q9NX04 203 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 MDFICQ9P1T7 246 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 ARMCX1Q9P291 453 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 VPS29Q9UBQ0 182 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 ZNF221Q9UK13 617 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 BTRCQ9Y297 605 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 MEMO1Q9Y316 297 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 MOB4Q9Y3A3 225 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 TMED5Q9Y3A6 229 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 ZDBF2Q9HCK1 2354 aa3.19□□□□□ -1.9
PTCD3-216ENST00000487043 TTC28Q96AY4 2481 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 SPAG17Q6Q759 2223 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 LOC100653049A0A140TA62 436 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 A0A1W2PNV4 684 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 XKRY2A2RUG3 117 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 OR6C74A6NCV1 312 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 SHISA9B4DS77 424 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 NPIPA7E9PJI5 369 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 G3V4G9 280 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 H3BMQ9 156 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 ZW10O43264 779 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 SRPX2O60687 465 aaPredicted RBP3.18□□□□□ -1.9
PTCD3-216ENST00000487043 TSC22D2O75157 780 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 KRT34O76011 436 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 SCGNO76038 276 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 MYO1DO94832 1006 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 ETHE1O95571 254 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 TBX6O95947 436 aaPredicted RBP3.18□□□□□ -1.9
PTCD3-216ENST00000487043 MELTFP08582 738 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 NPIPA8P0DM63 369 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 DBTP11182 482 aaKnown RBP3.18□□□□□ -1.9
PTCD3-216ENST00000487043 PRPS2P11908 318 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 COX4I1P13073 169 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 CD1EP15812 388 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 ACADSP16219 412 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 NCK1P16333 377 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 UGT2B7P16662 529 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 MT3P25713 68 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 PTBP1P26599 531 aaKnown RBP eCLIP3.18□□□□□ -1.97e-11■■■■■ 35.2
PTCD3-216ENST00000487043 PSMB5P28074 263 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 RPL38P63173 70 aaKnown RBP3.18□□□□□ -1.9
PTCD3-216ENST00000487043 REEP5Q00765 189 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 MS4A2Q01362 244 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 ST3GAL3Q11203 375 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 COX10Q12887 443 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 ZNF154Q13106 437 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 STX5Q13190 355 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 GANABQ14697 944 aaKnown RBP3.18□□□□□ -1.9
PTCD3-216ENST00000487043 MAPRE2Q15555 327 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 IMPG1Q17R60 797 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 SLC5A12Q1EHB4 618 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 SNAI3Q3KNW1 292 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 ADNP2Q6IQ32 1131 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 ADAM5Q6NVV9 412 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 NOXRED1Q6NXP6 359 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 SPESP1Q6UW49 350 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 PAQR7Q86WK9 346 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 OOSP2Q86WS3 158 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 FUNDC1Q8IVP5 155 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 PHC2Q8IXK0 858 aa3.18□□□□□ -1.9
PTCD3-216ENST00000487043 FAM9CQ8IZT9 166 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms