RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 C2CD4CQ8TF44 421 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 PTPMT1Q8WUK0 201 aaPredicted RBP10.66□□□□□ -0.7
MSH6-204ENST00000445503 OR2A7Q96R45 310 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 URM1Q9BTM9 101 aaKnown RBP10.66□□□□□ -0.7
MSH6-204ENST00000445503 C14orf166Q9Y224 244 aaKnown RBP10.66□□□□□ -0.7
MSH6-204ENST00000445503 A6NCN8 305 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 SERPINA2P20848 420 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 CNR1P21554 472 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 SLC37A1P57057 533 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 SLC26A5P58743 744 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 FHL1Q13642 323 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 EBPQ15125 230 aaKnown RBP10.65□□□□□ -0.7
MSH6-204ENST00000445503 FAM122BQ7Z309 247 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 STX12Q86Y82 276 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 NAXDQ8IW45 347 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 UEVLDQ8IX04 471 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 SLC22A24Q8N4F4 322 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 CLEC1AQ8NC01 280 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 OR4D6Q8NGJ1 314 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 SLAMF6Q96DU3 332 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 SCARF2Q96GP6 870 aaPredicted RBP10.65□□□□□ -0.7
MSH6-204ENST00000445503 GAS2L1Q99501 681 aaPredicted RBP10.65□□□□□ -0.7
MSH6-204ENST00000445503 SLCO5A1Q9H2Y9 848 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 C1orf198Q9H425 327 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 CNTD2Q9H8S5 307 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 NPTNQ9Y639 398 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 GPR31O00270 319 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 OR2F2O95006 317 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 MT-ATP6P00846 226 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 ABOP16442 354 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 IL11P20809 199 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 ABCD3P28288 659 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 CD38P28907 300 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 CDAP32320 146 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 INSM1Q01101 510 aaPredicted RBP10.65□□□□□ -0.7
MSH6-204ENST00000445503 OR2F1Q13607 317 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 ELAVL1Q15717 326 aaKnown RBP10.65□□□□□ -0.7
MSH6-204ENST00000445503 H3F3CQ6NXT2 135 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 TMEM71Q6P5X7 295 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 GPX8Q8TED1 209 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 ARL5BQ96KC2 179 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 SCPEP1Q9HB40 452 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 ANKRD10Q9NXR5 420 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 EHFQ9NZC4 300 aa10.65□□□□□ -0.7
MSH6-204ENST00000445503 COL4A3Q01955 1670 aa10.65□□□□□ -0.71
MSH6-204ENST00000445503 A0A1W2PNR3 127 aa10.65□□□□□ -0.71
MSH6-204ENST00000445503 TLCD2A6NGC4 264 aa10.65□□□□□ -0.71
MSH6-204ENST00000445503 TLX3O43711 291 aaPredicted RBP10.65□□□□□ -0.71
MSH6-204ENST00000445503 ZNF616Q08AN1 781 aa10.65□□□□□ -0.71
MSH6-204ENST00000445503 HYAL1Q12794 435 aa10.65□□□□□ -0.71
MSH6-204ENST00000445503 LINC00114Q6XXX2 140 aa10.65□□□□□ -0.71
MSH6-204ENST00000445503 SLC36A1Q7Z2H8 476 aa10.65□□□□□ -0.71
MSH6-204ENST00000445503 LYG2Q86SG7 212 aa10.65□□□□□ -0.71
MSH6-204ENST00000445503 MARVELD3Q96A59 401 aa10.65□□□□□ -0.71
MSH6-204ENST00000445503 TMEM59Q9BXS4 323 aa10.65□□□□□ -0.71
MSH6-204ENST00000445503 PTGES2Q9H7Z7 377 aa10.65□□□□□ -0.71
MSH6-204ENST00000445503 CA14Q9ULX7 337 aa10.65□□□□□ -0.71
MSH6-204ENST00000445503 FAM74A7A6NL05 159 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 C5orf67F2Z3F1 127 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 GABRR1P24046 479 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 PSMB6P28072 239 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 ZNF273Q14593 569 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 ISXQ2M1V0 245 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 FAM74A3Q4VXF1 159 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 SVBPQ8N300 66 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 OR1M1Q8NGA1 313 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 OR6K3Q8NGY3 331 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 DDIT4LQ96D03 193 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 ZCCHC4Q9H5U6 513 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 MEMO1Q9Y316 297 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 BCL2L11O43521 198 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 CSTBP04080 98 aaKnown RBP10.64□□□□□ -0.71
MSH6-204ENST00000445503 SERPINA5P05154 406 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 CD1AP06126 327 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 ZNF43P17038 809 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 CSF2RBP32927 897 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 HSF1Q00613 529 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 PAN3Q58A45 887 aaKnown RBP10.64□□□□□ -0.71
MSH6-204ENST00000445503 H1FNTQ75WM6 255 aaPredicted RBP10.64□□□□□ -0.71
MSH6-204ENST00000445503 OR1S1Q8NH92 325 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 CDCA3Q99618 268 aaPredicted RBP10.64□□□□□ -0.71
MSH6-204ENST00000445503 TMPRSS13Q9BYE2 586 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 RNF215Q9Y6U7 377 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 FRG2CA6NGY1 282 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 EIF4E2O60573 245 aaKnown RBP10.64□□□□□ -0.71
MSH6-204ENST00000445503 AQP8O94778 261 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 F12P00748 615 aaPredicted RBP10.64□□□□□ -0.71
MSH6-204ENST00000445503 IFNA21P01568 189 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 HOXC4P09017 264 aaPredicted RBP10.64□□□□□ -0.71
MSH6-204ENST00000445503 RPA2P15927 270 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 FXYD4P59646 89 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 ABCA11PQ4W5N1 156 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 TMEM200AQ86VY9 491 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 NECAB3Q96P71 396 aaPredicted RBP10.64□□□□□ -0.71
MSH6-204ENST00000445503 DNTTIP1Q9H147 329 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 C12orf10Q9HB07 376 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 FGF21Q9NSA1 209 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 ASH2LQ9UBL3 628 aa10.64□□□□□ -0.71
MSH6-204ENST00000445503 GDF2Q9UK05 429 aaPredicted RBP10.64□□□□□ -0.71
MSH6-204ENST00000445503 MMP17Q9ULZ9 603 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms