RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 COLCA1Q6ZS62 124 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 RNF148Q8N7C7 305 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 ZDHHC22Q8N966 263 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 PYURFQ96I23 114 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 TSSK2Q96PF2 358 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 NMNAT3Q96T66 252 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 ELAC2Q9BQ52 826 aaKnown RBP9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 SLC30A2Q9BRI3 323 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 IFT27Q9BW83 186 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 HCAR1Q9BXC0 346 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 PLA2G12AQ9BZM1 189 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 ESM1Q9NQ30 184 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 MMP26Q9NRE1 261 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 DDX28Q9NUL7 540 aaKnown RBP9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 NUP50Q9UKX7 468 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 B9D1Q9UPM9 204 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 INSIG2Q9Y5U4 225 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 V9GYQ6 96 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 A0A1B0GWJ7 208 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 TRAPPC2LH3BP13 241 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 IDH3BO43837 385 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 OR10H3O60404 316 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 FSTL3O95633 263 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 GPANK1O95872 356 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 FABP3P05413 133 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 RPS2P15880 293 aaKnown RBP9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 HIST1H1CP16403 213 aaKnown RBP9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 NOS3P29474 1203 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 SEC61A1P61619 476 aaKnown RBP9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 TUSC1Q2TAM9 212 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 SAMD4BQ5PRF9 694 aaKnown RBP9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 SLC18B1Q6NT16 456 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 CORO6Q6QEF8 472 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 ZNF620Q6ZNG0 422 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 DOK3Q7L591 496 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 ZBTB46Q86UZ6 589 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 C1orf87Q8N0U7 546 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 PGAM4Q8N0Y7 254 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 OR6V1Q8N148 313 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 BHLHE23Q8NDY6 225 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 OR2AJ1Q8NGZ0 328 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 OR4K13Q8NH42 304 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 SGMS2Q8NHU3 365 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 C22orf15Q8WYQ4 148 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 NSMCE2Q96MF7 247 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 ATF6BQ99941 703 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 SSBP3Q9BWW4 388 aaPredicted RBP9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 C1QTNF5Q9BXJ0 243 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 FAM107BQ9H098 131 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 RPRD1BQ9NQG5 326 aaKnown RBP9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 KCNG2Q9UJ96 466 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 TMCC3Q9ULS5 477 aa9.7□□□□□ -0.86
SQSTM1-203ENST00000422245 ARPC2O15144 300 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 MLNRO43193 412 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 SNX3O60493 162 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 ACSM4P0C7M7 580 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 PPIAL4GP0DN37 164 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 GATA4P43694 442 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 GSSP48637 474 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 TRAP1Q12931 704 aaKnown RBP9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 MALLQ13021 153 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 AWAT1Q58HT5 328 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 RPL13AP3Q6NVV1 102 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 BTNL3Q6UXE8 466 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 CFAP77Q6ZQR2 320 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 NLRC3Q7RTR2 1065 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 MOGAT3Q86VF5 341 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 KLBQ86Z14 1044 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 LINC00346Q8IVM7 164 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 CELF2-AS1Q8N7Q2 184 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 SIGLECL1Q8N7X8 197 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 SDR9C7Q8NEX9 313 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 ZNF420Q8TAQ5 688 aaPredicted RBP9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 ERGIC1Q969X5 290 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 PLEKHA8Q96JA3 519 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 PITX2Q99697 317 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 CDADC1Q9BWV3 514 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 SRA1Q9HD15 236 aaKnown RBP9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 IL1RAPQ9NPH3 570 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 TMEM100Q9NV29 134 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 NDE1Q9NXR1 346 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 ZNF69Q9UC07 566 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 MIOXQ9UGB7 285 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 CYB5R1Q9UHQ9 305 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 NOP16Q9Y3C1 178 aaKnown RBP9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 PPIAL4AQ9Y536 164 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 CDH10Q9Y6N8 788 aa9.69□□□□□ -0.86
SQSTM1-203ENST00000422245 F5H5K5 113 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 F5H5P2 479 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 H0YL77 283 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 CYB5R3P00387 301 aaPredicted RBP9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 HLA-DQA2P01906 255 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 WNT2P09544 360 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 IRF2P14316 349 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 PRTN3P24158 256 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 RRM2P31350 389 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 GGT2P36268 569 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 RBMXP38159 391 aaKnown RBP9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 PAX8Q06710 450 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 TSPAN31Q12999 210 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms