RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 TSACCQ96A04 125 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-203ENST00000412148 RNF126Q9BV68 326 aa5.13□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF471Q9BX82 626 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-203ENST00000412148 CST11Q9H112 138 aa5.13□□□□□ -1.59
CCDC88A-203ENST00000412148 CHMP1AQ9HD42 196 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-203ENST00000412148 ACKR4Q9NPB9 350 aa5.13□□□□□ -1.59
CCDC88A-203ENST00000412148 LPAR3Q9UBY5 353 aa5.13□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF230Q9UIE0 474 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-203ENST00000412148 OR52A1Q9UKL2 312 aa5.13□□□□□ -1.59
CCDC88A-203ENST00000412148 GTF2A1LQ9UNN4 478 aa5.13□□□□□ -1.59
CCDC88A-203ENST00000412148 GPR132Q9UNW8 380 aa5.13□□□□□ -1.59
CCDC88A-203ENST00000412148 A0A1W2PNV4 684 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 C4orf47A7E2U8 309 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 FAM171A2A8MVW0 826 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 PRAMEF26H0Y7S4 382 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 H3BMH7 237 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 GNB5O14775 395 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF217O75362 1048 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 APOC1P02654 83 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 CD5P06127 495 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 HOXB2P14652 356 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 HPGDP15428 266 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 FPR2P25090 351 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 DAP3P51398 398 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 CAV2P51636 162 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 SLC26A5P58743 744 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 ARL6IP1Q15041 203 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF239Q16600 458 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 PRAMEF17Q5VTA0 474 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 ALKBH2Q6NS38 261 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 ARMC6Q6NXE6 501 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 TMPRSS9Q7Z410 1059 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 NAA40Q86UY6 237 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 FJX1Q86VR8 437 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 CCDC54Q8NEL0 328 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 OR13C3Q8NGS6 347 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF721Q8TF20 911 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 GLYATL2Q8WU03 294 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 ASB10Q8WXI3 467 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 DVL3Q92997 716 aaPredicted RBP5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF775Q96BV0 537 aaPredicted RBP5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF75AQ96N20 296 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 CNTNAP3BQ96NU0 1288 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 PDCD10Q9BUL8 212 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 SLC22A11Q9NSA0 550 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 CUTCQ9NTM9 273 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 DECR2Q9NUI1 292 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 FAM206AQ9NX38 181 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 PPP4R1LQ9P1A2 415 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 GHRLQ9UBU3 117 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 A0A0A6YYC8 382 aaPredicted RBP5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 LOC107986453A0A1B0GWG9 222 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 OR2AT4A6NND4 320 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 I3L1I5 382 aaPredicted RBP5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 M0QYG6 137 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 MFNGO00587 321 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 ADAM10O14672 748 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 SFT2D2O95562 160 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 DDAH2O95865 285 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 GP1BBP13224 206 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 MAOAP21397 527 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 ABCD3P28288 659 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 MAS1LP35410 378 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 WASP42768 502 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 DNASE1L1P49184 302 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 PPM1FP49593 454 aaPredicted RBP5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 PGDP52209 483 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 DEFA5Q01523 94 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 UNC119Q13432 240 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 EIF2B1Q14232 305 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 ELAVL1Q15717 326 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 TM4SF20Q53R12 229 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF627Q7L945 461 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 C17orf82Q86X59 251 aaPredicted RBP5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 FAM89BQ8N5H3 189 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 C10orf53Q8N6V4 93 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 C15orf54Q8N8G6 183 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 OR10R2Q8NGX6 335 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 LILRB1Q8NHL6 650 aaPredicted RBP5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 TERB2Q8NHR7 220 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 MFSD8Q8NHS3 518 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 NUDCD2Q8WVJ2 157 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 ST8SIA1Q92185 356 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 MRGPRX1Q96LB2 322 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 ULBP3Q9BZM4 244 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 PARP11Q9NR21 331 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 UQCC1Q9NVA1 299 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 RCC2Q9P258 522 aaKnown RBP5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 SLC22A13Q9Y226 551 aa5.12□□□□□ -1.59
CCDC88A-203ENST00000412148 SPTY2D1-AS1A0A0U1RR47 76 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 FAM25EA8MYX2 175 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 C17orf105B2RV13 164 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 F5H0A9 414 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 F8W036 122 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 FADS1O60427 444 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 OR6A2O95222 327 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 ACTL6AO96019 429 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 S100A8P05109 93 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 SMIM6P0DI80 62 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 CTLA4P16410 223 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms