RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SEH1LQ96EE3 360 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 RASL10BQ96S79 203 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 CRYZL1O95825 349 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 TXNDC12O95881 172 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 FOSL2P15408 326 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 HRH1P35367 487 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 AKR1C2P52895 323 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 ACY1Q03154 408 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 AKR1C1Q04828 323 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 RNASE10Q5GAN6 216 aaKnown RBP11.91□□□□□ -0.5
VPS54-203ENST00000409558 COL13A1Q5TAT6 717 aaPredicted RBP11.91□□□□□ -0.5
VPS54-203ENST00000409558 CATSPERDQ86XM0 798 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 CCDC28AQ8IWP9 274 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 SHDQ96IW2 340 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 MS4A7Q9GZW8 240 aaPredicted RBP11.91□□□□□ -0.5
VPS54-203ENST00000409558 ZNF160Q9HCG1 818 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 ZNF319Q9P2F9 582 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 PMS2P1A4D2B8 440 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 F5H5P2 479 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 TPOP07202 933 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 DAP3P51398 398 aaKnown RBP11.91□□□□□ -0.5
VPS54-203ENST00000409558 ZNF121P58317 390 aaPredicted RBP11.91□□□□□ -0.5
VPS54-203ENST00000409558 SLC9A3R2Q15599 337 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 ELP2Q6IA86 826 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 DNM1P34Q6PK57 102 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 C3P1Q6ZMU1 363 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 SRPK3Q9UPE1 567 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 TRBV5-7A0A0A0MS05 114 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 A0A1W2PPC1 479 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 GSTZ1O43708 216 aaPredicted RBP11.91□□□□□ -0.5
VPS54-203ENST00000409558 SERPINA2P20848 420 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 OR3A4PP47883 348 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 NPY4RP50391 375 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 GLIPR1L1Q6UWM5 242 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 STEAP2Q8NFT2 490 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 C1orf198Q9H425 327 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 PIPOXQ9P0Z9 390 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 KLK13Q9UKR3 277 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 ZFHX4Q86UP3 3567 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 LRP4O75096 1905 aa11.91□□□□□ -0.5
VPS54-203ENST00000409558 OR5H15A6NDH6 313 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 NR0B2Q15466 257 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 ISXQ2M1V0 245 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 UNQ6126/PRO20091Q6UXV3 157 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 BEST3Q8N1M1 668 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 OR2AK2Q8NG84 335 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 OR2AE1Q8NHA4 323 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 IFI44Q8TCB0 444 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 ASB17Q8WXJ9 295 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 ZNF837Q96EG3 531 aaPredicted RBP11.9□□□□□ -0.5
VPS54-203ENST00000409558 MFFQ9GZY8 342 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 DSPP15924 2871 aaKnown RBP11.9□□□□□ -0.5
VPS54-203ENST00000409558 CFAP47Q6ZTR5 3102 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 FAM221AA4D161 298 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 NPIPB7O75200 414 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 CCL3P10147 92 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 ZNF93P35789 620 aaPredicted RBP11.9□□□□□ -0.5
VPS54-203ENST00000409558 C17orf82Q86X59 251 aaPredicted RBP11.9□□□□□ -0.5
VPS54-203ENST00000409558 SLC43A2Q8N370 569 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 ST8SIA4Q92187 359 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 ZNF385AQ96PM9 386 aaKnown RBP11.9□□□□□ -0.5
VPS54-203ENST00000409558 ZCCHC4Q9H5U6 513 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 HEXA-AS1Q9H8Q6 139 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 ZNF701Q9NV72 531 aaPredicted RBP11.9□□□□□ -0.5
VPS54-203ENST00000409558 A0A1B0GUH1 482 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 TMEM200CA6NKL6 621 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 FTCDNL1E5RQL4 147 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 ZNF432O94892 652 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 TTRP02766 147 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 CSF1P09603 554 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 BDKRB2P30411 391 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 ETV7Q9Y603 341 aa11.9□□□□□ -0.5
VPS54-203ENST00000409558 ROS1P08922 2347 aa11.9□□□□□ -0.51
VPS54-203ENST00000409558 LIPT2A6NK58 231 aa11.9□□□□□ -0.51
VPS54-203ENST00000409558 PHYHO14832 338 aa11.9□□□□□ -0.51
VPS54-203ENST00000409558 OR4E1P0C645 316 aa11.9□□□□□ -0.51
VPS54-203ENST00000409558 NUDT1P36639 197 aa11.9□□□□□ -0.51
VPS54-203ENST00000409558 C20orf196Q8IYI0 205 aa11.9□□□□□ -0.51
VPS54-203ENST00000409558 PHYHIPQ92561 330 aa11.9□□□□□ -0.51
VPS54-203ENST00000409558 PGAM5Q96HS1 289 aa11.9□□□□□ -0.51
VPS54-203ENST00000409558 SPSB2Q99619 263 aa11.9□□□□□ -0.51
VPS54-203ENST00000409558 C7orf50Q9BRJ6 194 aaKnown RBP11.9□□□□□ -0.51
VPS54-203ENST00000409558 G6PC2Q9NQR9 355 aa11.9□□□□□ -0.51
VPS54-203ENST00000409558 GSKIPQ9P0R6 139 aa11.9□□□□□ -0.51
VPS54-203ENST00000409558 R4GN57 208 aa11.9□□□□□ -0.51
VPS54-203ENST00000409558 PRR14LQ5THK1 2151 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 BDP1A6H8Y1 2624 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 FREM1Q5H8C1 2179 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 G3V3Q6 166 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 SOCS1O15524 211 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 KLK3P07288 261 aaPredicted RBP11.89□□□□□ -0.51
VPS54-203ENST00000409558 EPHA4P54764 986 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 ESCO2Q56NI9 601 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 ZNF468Q5VIY5 522 aaPredicted RBP11.89□□□□□ -0.51
VPS54-203ENST00000409558 PRMT8Q9NR22 394 aaPredicted RBP11.89□□□□□ -0.51
VPS54-203ENST00000409558 WIF1Q9Y5W5 379 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 METTL21EPA6NDL7 271 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 ANKUB1A6NFN9 424 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 KNG1P01042 644 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms