RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 TCF21O43680 179 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 CNIH1O95406 144 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 SIX6O95475 246 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 OR8G3PP0DMU2 310 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 GIFP27352 417 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 ATP4BP51164 291 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 ZNF92Q03936 586 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 VRK3Q8IV63 474 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 KRTCAP2Q8N6L1 136 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 LSMEM1Q8N8F7 131 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 OR2T33Q8NG76 320 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 OR52E2Q8NGJ4 325 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 NSUN5Q96P11 429 aaKnown RBP6.61□□□□□ -1.35
SCN9A-202ENST00000409435 ZNF317Q96PQ6 595 aaPredicted RBP6.61□□□□□ -1.35
SCN9A-202ENST00000409435 OR2A14Q96R47 310 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 MS4A5Q9H3V2 200 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 ZNF337Q9Y3M9 751 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 SLC22A31A6NKX4 558 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 CXorf49A8MYA2 514 aaPredicted RBP6.61□□□□□ -1.35
SCN9A-202ENST00000409435 G3V3Q6 166 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 H0YIV9 168 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 DBHP09172 617 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 SRD5A2P31213 254 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 MTNR1AP48039 350 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 PDLIM3Q53GG5 364 aaPredicted RBP6.61□□□□□ -1.35
SCN9A-202ENST00000409435 TMEM97Q5BJF2 176 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 WDR73Q6P4I2 378 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 PARP16Q8N5Y8 322 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 OR5D16Q8NGK9 328 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 RHOXF1Q8NHV9 184 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 TSSK2Q96PF2 358 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 TMEM43Q9BTV4 400 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 SLC25A32Q9H2D1 315 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 ACSS1Q9NUB1 689 aaPredicted RBP6.61□□□□□ -1.35
SCN9A-202ENST00000409435 SIDT1Q9NXL6 827 aaKnown RBP6.61□□□□□ -1.35
SCN9A-202ENST00000409435 IL20Q9NYY1 176 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 TEX264Q9Y6I9 313 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 MEGF11A6BM72 1044 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 SMIM6P0DI80 62 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 NQO2P16083 231 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 RPL11P62913 178 aaKnown RBP6.61□□□□□ -1.35
SCN9A-202ENST00000409435 SLC48A1Q6P1K1 146 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 BPIFCQ8NFQ6 507 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 ZFAND1Q8TCF1 268 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 DTD1Q8TEA8 209 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 PCNPQ8WW12 178 aaKnown RBP6.61□□□□□ -1.35
SCN9A-202ENST00000409435 ZNF778Q96MU6 729 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 MMP25Q9NPA2 562 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 ZNF443Q9Y2A4 671 aaPredicted RBP6.61□□□□□ -1.35
SCN9A-202ENST00000409435 TRIP12Q14669 1992 aaPredicted RBP6.61□□□□□ -1.35
SCN9A-202ENST00000409435 SMLR1H3BR10 107 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 PMP22Q01453 160 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 PPP1R8Q12972 351 aaKnown RBP6.61□□□□□ -1.35
SCN9A-202ENST00000409435 DUSP8Q13202 625 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 LTC4SQ16873 150 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 GJC3Q8NFK1 279 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 SYNPRQ8TBG9 265 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 TSPEARQ8WU66 669 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 MS4A6EQ96DS6 147 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 BARHL1Q9BZE3 327 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 METRNQ9UJH8 293 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 RPH3ALQ9UNE2 315 aa6.61□□□□□ -1.35
SCN9A-202ENST00000409435 SPINT1O43278 529 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 XRCC3O43542 346 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 DOK2O60496 412 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 AKR7A3O95154 331 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 PF4P02776 101 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 CRHP06850 196 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 TMEM11P17152 192 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 ARNTP27540 789 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 PYCR1P32322 319 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 RPS4XP62701 263 aaKnown RBP6.6□□□□□ -1.35
SCN9A-202ENST00000409435 ZNF266Q14584 549 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 PROX2Q3B8N5 592 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 EPGNQ6UW88 154 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 MAMSTRQ6ZN01 415 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 SLCO4C1Q6ZQN7 724 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 RPS27LQ71UM5 84 aaKnown RBP6.6□□□□□ -1.35
SCN9A-202ENST00000409435 SLC36A1Q7Z2H8 476 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 GLCCI1Q86VQ1 547 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 SULF2Q8IWU5 870 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 HSD17B11Q8NBQ5 300 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 ST8SIA1Q92185 356 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 SLC35A4Q96G79 324 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 FOXN4Q96NZ1 517 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 GPA33Q99795 319 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 ANKRD60Q9BZ19 345 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 PDFQ9HBH1 243 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 FBXL2Q9UKC9 423 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 TIMM10BQ9Y5J6 103 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 IGHV3-15A0A0B4J1V0 119 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 A0A1W2PPK0 400 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 HLA-AP01891 365 aaKnown RBP6.6□□□□□ -1.35
SCN9A-202ENST00000409435 MRPL3P09001 348 aaKnown RBP6.6□□□□□ -1.35
SCN9A-202ENST00000409435 CLDN8P56748 225 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 ENDOGQ14249 297 aaKnown RBP6.6□□□□□ -1.35
SCN9A-202ENST00000409435 LTB4RQ15722 352 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 TTC32Q5I0X7 151 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 C6orf136Q5SQH8 315 aa6.6□□□□□ -1.35
SCN9A-202ENST00000409435 TMUB2Q71RG4 321 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms