RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 SMIM10L1P0DMW3 83 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 HGFACQ04756 655 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 ATXN7L3Q14CW9 347 aaPredicted RBP9.99□□□□□ -0.81
CUX1-204ENST00000393824 NKPD1Q17RQ9 610 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 MRPL2Q5T653 305 aaKnown RBP9.99□□□□□ -0.81
CUX1-204ENST00000393824 TMEM244Q5VVB8 128 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 LSRQ86X29 649 aaPredicted RBP9.99□□□□□ -0.81
CUX1-204ENST00000393824 GALNT16Q8N428 558 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 OR51L1Q8NGJ5 315 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 OR8S1Q8NH09 359 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 RHBDD1Q8TEB9 315 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 SAT2Q96F10 170 aaPredicted RBP9.99□□□□□ -0.81
CUX1-204ENST00000393824 C14orf79Q96F83 325 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 SMIM10Q96HG1 83 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 TAAR9Q96RI9 348 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 STACQ99469 402 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 NAA11Q9BSU3 229 aaPredicted RBP9.99□□□□□ -0.81
CUX1-204ENST00000393824 RAB33BQ9H082 229 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 RHOFQ9HBH0 211 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 SLC17A5Q9NRA2 495 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 C19orf53Q9UNZ5 99 aaPredicted RBP9.99□□□□□ -0.81
CUX1-204ENST00000393824 NOP16Q9Y3C1 178 aaKnown RBP9.99□□□□□ -0.81
CUX1-204ENST00000393824 IGHV5-10-1A0A0J9YXX1 117 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 CENPVL1A0A0U1RR11 272 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 C4orf47A7E2U8 309 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 TXNL1O43396 289 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 FARS2O95363 451 aaKnown RBP9.99□□□□□ -0.81
CUX1-204ENST00000393824 CD5P06127 495 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 OR8U8P0C7N1 319 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 SLC35G6P0C7Q6 338 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 ZNF735P0CB33 412 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 MUC1P15941 1255 aaPredicted RBP9.99□□□□□ -0.81
CUX1-204ENST00000393824 HIST1H1CP16403 213 aaKnown RBP9.99□□□□□ -0.81
CUX1-204ENST00000393824 AIMP2Q13155 320 aaKnown RBP9.99□□□□□ -0.81
CUX1-204ENST00000393824 RUNX2Q13950 521 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 ISXQ2M1V0 245 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 WDR74Q6RFH5 385 aaPredicted RBP9.99□□□□□ -0.81
CUX1-204ENST00000393824 OR4K13Q8NH42 304 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 NT5CQ8TCD5 201 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 CPNE4Q96A23 557 aaPredicted RBP9.99□□□□□ -0.81
CUX1-204ENST00000393824 CLCC1Q96S66 551 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 ZNF426Q9BUY5 554 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 CYTL1Q9NRR1 136 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 LPAR3Q9UBY5 353 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 PCDHGA1Q9Y5H4 931 aa9.99□□□□□ -0.81
CUX1-204ENST00000393824 A0A087WV62 115 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 RNASEK-C17orf49H0YIS7 233 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 ZNF208O43345 1280 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 SRPX2O60687 465 aaPredicted RBP9.98□□□□□ -0.81
CUX1-204ENST00000393824 HLA-AP01891 365 aaKnown RBP9.98□□□□□ -0.81
CUX1-204ENST00000393824 HEXBP07686 556 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 GUSBP08236 651 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 PGAM2P15259 253 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 ZBTB25P24278 435 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 GRK6P43250 576 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 HTR5AP47898 357 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 EFNB2P52799 333 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 FOXL2P58012 376 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 RBM39Q14498 530 aaKnown RBP9.98□□□□□ -0.81
CUX1-204ENST00000393824 TOMM20Q15388 145 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 DCST2Q5T1A1 773 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 BIVMQ86UB2 503 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 PLXDC1Q8IUK5 500 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 KDF1Q8NAX2 398 aaPredicted RBP9.98□□□□□ -0.81
CUX1-204ENST00000393824 TMEM52Q8NDY8 209 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 OR4K17Q8NGC6 315 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 OR9A4Q8NGU2 314 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 ZNF417Q8TAU3 575 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 NUDCD2Q8WVJ2 157 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 ZNRF4Q8WWF5 429 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 TCTN2Q96GX1 697 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 SMIM8Q96KF7 97 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 ZNF107Q9UII5 783 aaPredicted RBP9.98□□□□□ -0.81
CUX1-204ENST00000393824 TIMM10BQ9Y5J6 103 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 TRBV5-7A0A0A0MS05 114 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 A0A0B4J2E0 115 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 A0A1B0GX12 115 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 MEIS3P1A6NDR6 274 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 BLOC1S5-TXNDC5H3BN57 136 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 MFNGO00587 321 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 CCSO14618 274 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 PPIHO43447 177 aaKnown RBP9.98□□□□□ -0.81
CUX1-204ENST00000393824 FOXS1O43638 330 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 TIAF1O95411 115 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 IL2RAP01589 272 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 SFTA3P0C7M3 94 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 PNLIPP16233 465 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 NDUFB7P17568 137 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 PPICP45877 212 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 F2RL1P55085 397 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 RAB4BP61018 213 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 PRTGQ2VWP7 1150 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 CDRT4Q8N9R6 151 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 OR51D1Q8NGF3 324 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 OR10R2Q8NGX6 335 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 OR5AK2Q8NH90 309 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 OR1L3Q8NH93 324 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 MITD1Q8WV92 249 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 TMED6Q8WW62 240 aa9.98□□□□□ -0.81
CUX1-204ENST00000393824 RERGQ96A58 199 aaPredicted RBP9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms