RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 RAB40AQ8WXH6 277 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 RNF166Q96A37 237 aaPredicted RBP16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 SLAMF6Q96DU3 332 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 MAP6Q96JE9 813 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 LINC00470Q9BZP3 86 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 BCO1Q9HAY6 547 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 ING1Q9UK53 422 aaPredicted RBP16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 LRP12Q9Y561 859 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 ETV7Q9Y603 341 aa16.07■□□□□ 0.16
CCDC88C-203ENST00000389856 IFITM5A6NNB3 132 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 ZNF878C9JN71 531 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 K7ENP7 123 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 ZFPL1O95159 310 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 DHFRP00374 187 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 PAHP00439 452 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 RAG2P55895 527 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 OR7E24Q6IFN5 339 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 INO80CQ6PI98 192 aaPredicted RBP16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 UBASH3BQ8TF42 649 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 C4orf45Q96LM5 186 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 ABHD1Q96SE0 405 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 AMELYQ99218 206 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 PRDM14Q9GZV8 571 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 ABCG5Q9H222 651 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 SLCO5A1Q9H2Y9 848 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 DPAGT1Q9H3H5 408 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 MOB1AQ9H8S9 216 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 GLRX2Q9NS18 164 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 SPRR3Q9UBC9 169 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 GDF2Q9UK05 429 aaPredicted RBP16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 ALG5Q9Y673 324 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 R4GMQ9 66 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 V9GY05 133 aa16.06■□□□□ 0.16
CCDC88C-203ENST00000389856 A0A0B4J293 547 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 SLC22A20A6NK97 555 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 PIN1P1O15428 100 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 EEF1E1O43324 174 aaKnown RBP16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 MNDAP41218 407 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 NANOS3P60323 173 aaKnown RBP16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 P4HA3Q7Z4N8 544 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 GJC3Q8NFK1 279 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 OR5H6Q8NGV6 325 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 FNDC9Q8TBE3 224 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 PLEKHA1Q9HB21 404 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 TCF7L1Q9HCS4 588 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 EMC7Q9NPA0 242 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 CENPMQ9NSP4 180 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 ING3Q9NXR8 418 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 AK6Q9Y3D8 172 aaKnown RBP16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 NUBP2Q9Y5Y2 271 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 OR14I1A6ND48 311 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 SNRPBP14678 240 aaKnown RBP16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 CFPP27918 469 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 HSD11B1P28845 292 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 CDAP32320 146 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 GRB2P62993 217 aaKnown RBP16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 NRN1LQ496H8 165 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 ZNF704Q6ZNC4 412 aaPredicted RBP16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 ABHD12BQ7Z5M8 362 aaPredicted RBP16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 NOXA1Q86UR1 476 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 TOMM5Q8N4H5 51 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 GPR148Q8TDV2 347 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 SMIM4Q8WVI0 70 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 YIPF5Q969M3 257 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 UPRTQ96BW1 309 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 FRRS1LQ9P0K9 344 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 ASH2LQ9UBL3 628 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 NUFIP1Q9UHK0 495 aaKnown RBP16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 GTF2A1LQ9UNN4 478 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 LHFPL6Q9Y693 200 aa16.05■□□□□ 0.16
CCDC88C-203ENST00000389856 TRBV5-7A0A0A0MS05 114 aa16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 OR4C45A6NMZ5 311 aa16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 TTLL8A6PVC2 850 aa16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 FARS2O95363 451 aaKnown RBP16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 APOC1P02654 83 aa16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 ERP29P30040 261 aaKnown RBP16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 PCBD1P61457 104 aa16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 RRAS2P62070 204 aaPredicted RBP16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 MRPS15P82914 257 aaKnown RBP16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 MADCAM1Q13477 382 aa16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 FAM27BQ5VT28 67 aa16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 UBE2J2Q8N2K1 259 aa16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 LGALS14Q8TCE9 139 aa16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 RGP1Q92546 391 aaPredicted RBP16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 APH1AQ96BI3 265 aa16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 ZNF775Q96BV0 537 aaPredicted RBP16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 ACTR6Q9GZN1 396 aa16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 CRLF2Q9HC73 371 aa16.04■□□□□ 0.16
CCDC88C-203ENST00000389856 NAP1L6A6NFF2 107 aa16.03■□□□□ 0.16
CCDC88C-203ENST00000389856 ZNF587BE7ETH6 402 aa16.03■□□□□ 0.16
CCDC88C-203ENST00000389856 ECDO95905 644 aaPredicted RBP16.03■□□□□ 0.16
CCDC88C-203ENST00000389856 ARSBP15848 533 aa16.03■□□□□ 0.16
CCDC88C-203ENST00000389856 MMP16P51512 607 aa16.03■□□□□ 0.16
CCDC88C-203ENST00000389856 AP3S2P59780 193 aa16.03■□□□□ 0.16
CCDC88C-203ENST00000389856 SLC36A2Q495M3 483 aa16.03■□□□□ 0.16
CCDC88C-203ENST00000389856 PHYHD1Q5SRE7 291 aa16.03■□□□□ 0.16
CCDC88C-203ENST00000389856 BCL2L15Q5TBC7 163 aa16.03■□□□□ 0.16
CCDC88C-203ENST00000389856 CORO6Q6QEF8 472 aa16.03■□□□□ 0.16
CCDC88C-203ENST00000389856 CATSPERDQ86XM0 798 aa16.03■□□□□ 0.16
CCDC88C-203ENST00000389856 CAPSLQ8WWF8 208 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms