RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 SLC5A6Q9Y289 635 aa12.74□□□□□ -0.37
CD48-201ENST00000368045 IGKV1D-43A0A0B4J1Z2 117 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 OR5H14A6NHG9 310 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 EIF1AYO14602 144 aaKnown RBP12.73□□□□□ -0.37
CD48-201ENST00000368045 SYT7O43581 403 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 HEXBP07686 556 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 ZBTB25P24278 435 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 EIF1AXP47813 144 aaKnown RBP12.73□□□□□ -0.37
CD48-201ENST00000368045 CXADRP78310 365 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 CDNFQ49AH0 187 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 SCGB2B2Q4G0G5 96 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 SMUG1Q53HV7 270 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 OR10K2Q6IF99 312 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 BVESQ8NE79 360 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 OR5L2Q8NGL0 311 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 OR1S1Q8NH92 325 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 GAL3ST1Q99999 423 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 MRPL13Q9BYD1 178 aaKnown RBP12.73□□□□□ -0.37
CD48-201ENST00000368045 SHARPINQ9H0F6 387 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 DNTTIP1Q9H147 329 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 SDHAF3Q9NRP4 125 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 SERINC1Q9NRX5 453 aa12.73□□□□□ -0.37
CD48-201ENST00000368045 MRPS17Q9Y2R5 130 aaKnown RBP12.73□□□□□ -0.37
CD48-201ENST00000368045 NOP16Q9Y3C1 178 aaKnown RBP12.73□□□□□ -0.37
CD48-201ENST00000368045 TP53BP1Q12888 1972 aaPredicted RBP12.72□□□□□ -0.37
CD48-201ENST00000368045 LMX1BO60663 402 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 HPP00738 406 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 HLA-AP01891 365 aaKnown RBP12.72□□□□□ -0.37
CD48-201ENST00000368045 CHRM2P08172 466 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 RAB3AP20336 220 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 GNALP38405 381 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 ZNF41P51814 821 aaPredicted RBP12.72□□□□□ -0.37
CD48-201ENST00000368045 BIDP55957 195 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 CLDN6P56747 220 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 C11orf87Q6NUJ2 197 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 CORO6Q6QEF8 472 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 OR2W3Q7Z3T1 314 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 PAQR4Q8N4S7 273 aaPredicted RBP12.72□□□□□ -0.37
CD48-201ENST00000368045 MITD1Q8WV92 249 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 ST8SIA2Q92186 375 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 PHYHIPLQ96FC7 376 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 PHF7Q9BWX1 381 aaPredicted RBP12.72□□□□□ -0.37
CD48-201ENST00000368045 SLC7A5P2Q9GIP4 190 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 MED29Q9NX70 200 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 TNFSF18Q9UNG2 199 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 VSIG4Q9Y279 399 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 FARSAQ9Y285 508 aaKnown RBP12.72□□□□□ -0.37
CD48-201ENST00000368045 KNL1Q8NG31 2342 aa12.72□□□□□ -0.37
CD48-201ENST00000368045 IGHV3-20A0A0C4DH32 117 aa12.71□□□□□ -0.37
CD48-201ENST00000368045 D6RAR5 112 aa12.71□□□□□ -0.37
CD48-201ENST00000368045 HOXD11P31277 338 aaPredicted RBP12.71□□□□□ -0.37
CD48-201ENST00000368045 ACY1Q03154 408 aa12.71□□□□□ -0.37
CD48-201ENST00000368045 UNC119Q13432 240 aa12.71□□□□□ -0.37
CD48-201ENST00000368045 SMAD4Q13485 552 aaKnown RBP12.71□□□□□ -0.37
CD48-201ENST00000368045 FAM189A2Q15884 450 aa12.71□□□□□ -0.37
CD48-201ENST00000368045 ARSKQ6UWY0 536 aa12.71□□□□□ -0.37
CD48-201ENST00000368045 WDFY1Q8IWB7 410 aa12.71□□□□□ -0.37
CD48-201ENST00000368045 OR52N4Q8NGI2 321 aa12.71□□□□□ -0.37
CD48-201ENST00000368045 PHB2Q99623 299 aa12.71□□□□□ -0.37
CD48-201ENST00000368045 NPAS1Q99742 590 aa12.71□□□□□ -0.37
CD48-201ENST00000368045 ZNF576Q9H609 170 aa12.71□□□□□ -0.37
CD48-201ENST00000368045 IFT46Q9NQC8 304 aa12.71□□□□□ -0.37
CD48-201ENST00000368045 PPP4R1LQ9P1A2 415 aa12.71□□□□□ -0.37
CD48-201ENST00000368045 REV3LO60673 3130 aa12.71□□□□□ -0.37
CD48-201ENST00000368045 LOC101059948A0A1B0GTJ6 334 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 KANTRA0A1W2PQU2 76 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 TMEM14DPA8MWL7 114 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 ZNF878C9JN71 531 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 BCL2L11O43521 198 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 IGHG1P01857 330 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 VSIG8P0DPA2 414 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 ZNF20P17024 532 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 CD96P40200 585 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 TAS2R31P59538 309 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 EIF3IQ13347 325 aaKnown RBP12.71□□□□□ -0.38
CD48-201ENST00000368045 NKAIN1Q4KMZ8 207 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 SHISA6Q6ZSJ9 500 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 UEVLDQ8IX04 471 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 CHST4Q8NCG5 386 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 NOXO1Q8NFA2 376 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 PXT1Q8NFP0 134 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 OR10R2Q8NGX6 335 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 LHFPL5Q8TAF8 219 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 DNASE2BQ8WZ79 361 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 ADAT3Q96EY9 351 aaPredicted RBP12.71□□□□□ -0.38
CD48-201ENST00000368045 PDCD10Q9BUL8 212 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 ZMAT3Q9HA38 289 aaKnown RBP12.71□□□□□ -0.38
CD48-201ENST00000368045 RASL12Q9NYN1 266 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 B3GAT1Q9P2W7 334 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 FBXL2Q9UKC9 423 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 ANAPC10Q9UM13 185 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 VDAC3Q9Y277 283 aa12.71□□□□□ -0.38
CD48-201ENST00000368045 TRBV11-1A0A0K0K1C0 115 aa12.7□□□□□ -0.38
CD48-201ENST00000368045 C9orf170A2RU37 121 aa12.7□□□□□ -0.38
CD48-201ENST00000368045 C2orf72A6NCS6 295 aa12.7□□□□□ -0.38
CD48-201ENST00000368045 WIPF3A6NGB9 483 aa12.7□□□□□ -0.38
CD48-201ENST00000368045 ZNF354AO60765 605 aaPredicted RBP12.7□□□□□ -0.38
CD48-201ENST00000368045 STK17BO94768 372 aa12.7□□□□□ -0.38
CD48-201ENST00000368045 SPDEFO95238 335 aa12.7□□□□□ -0.38
CD48-201ENST00000368045 RLN2P04090 185 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms