RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 ZNF160Q9HCG1 818 aa13.18□□□□□ -0.3
CLCNKA-201ENST00000331433 GPN1Q9HCN4 374 aaPredicted RBP13.18□□□□□ -0.3
CLCNKA-201ENST00000331433 PIPOXQ9P0Z9 390 aa13.18□□□□□ -0.3
CLCNKA-201ENST00000331433 IGHV3-15A0A0B4J1V0 119 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 TMEM235A6NFC5 223 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 ZNF726A6NNF4 738 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 ZNF878C9JN71 531 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 IL5P05113 134 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 LPLP06858 475 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 TPOP07202 933 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 CPN1P15169 458 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 DUSP3P51452 185 aaPredicted RBP13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 CLDN17P56750 224 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 UBE2MP61081 183 aaKnown RBP13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 MC2RQ01718 297 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 EXT1Q16394 746 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 ZBTB37Q5TC79 503 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 RAET1LQ5VY80 246 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 OR2Y1Q8NGV0 311 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 OR6N1Q8NGY5 312 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 FAM46BQ96A09 425 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 SORCS2Q96PQ0 1159 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 TECTAO75443 2155 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 M0QYG6 137 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 TNFRSF10AO00220 468 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 ACTBP60709 375 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 PSMA6P60900 246 aaKnown RBP13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 ACTG1P63261 375 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 GABREP78334 506 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 SLC35A1P78382 337 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 TRA2AQ13595 282 aaKnown RBP eCLIP13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 TAF13Q15543 124 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 SLC36A1Q7Z2H8 476 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 RNF144BQ7Z419 303 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 COMMD2Q86X83 199 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 GTPBP8Q8N3Z3 284 aaPredicted RBP13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 GALNT16Q8N428 558 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 FTMTQ8N4E7 242 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 SPICQ8N5J4 248 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 OR1M1Q8NGA1 313 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 CMBLQ96DG6 245 aa13.17□□□□□ -0.3
CLCNKA-201ENST00000331433 A0A1B0GTI1 187 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 SSR4P51571 173 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 HIST3H3Q16695 136 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 ZNF468Q5VIY5 522 aaPredicted RBP13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 TEX261Q6UWH6 196 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 C1orf210Q8IVY1 113 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 TMEM156Q8N614 296 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 SPACA5Q96QH8 159 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 CHST6Q9GZX3 395 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 SLC39A1Q9NY26 324 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 ZNF319Q9P2F9 582 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 U3KQ87 197 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 NSG1A0A0A6YYJ2 146 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 WIPF3A6NGB9 483 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 SNRPGP15A8MWD9 76 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 LIFP15018 202 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 ABOP16442 354 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 ZNF121P58317 390 aaPredicted RBP13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 TSPAN5P62079 268 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 OC90Q02509 493 aaPredicted RBP13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 UNC119Q13432 240 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 C2orf68Q2NKX9 166 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 HDDC2Q7Z4H3 204 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 ABHD12BQ7Z5M8 362 aaPredicted RBP13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 PAQR4Q8N4S7 273 aaPredicted RBP13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 UXS1Q8NBZ7 420 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 M1APQ8TC57 530 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 CITED4Q96RK1 184 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 UCN2Q96RP3 112 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 ANGPTL4Q9BY76 406 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 TINAGL1Q9GZM7 467 aaPredicted RBP13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 TMEM138Q9NPI0 162 aa13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 PNRC2Q9NPJ4 139 aaKnown RBP13.16□□□□□ -0.3
CLCNKA-201ENST00000331433 OR2M5A3KFT3 312 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 SIX6O95475 246 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 RAB3DO95716 219 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 TAS2R19P59542 299 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 GNG2P59768 71 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 RPS18P62269 152 aaKnown RBP13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 ZXDAP98168 799 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 ZNF239Q16600 458 aaKnown RBP13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 CLPPQ16740 277 aaPredicted RBP13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 GFOD2Q3B7J2 385 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 RPS19BP1Q86WX3 136 aaKnown RBP13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 ZNF680Q8NEM1 530 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 OR8B12Q8NGG6 310 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 FOXRED1Q96CU9 486 aaPredicted RBP13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 DPCDQ9BVM2 203 aaPredicted RBP13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 IRF2BPLQ9H1B7 796 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 EXO5Q9H790 373 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 KLK13Q9UKR3 277 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 GPR179Q6PRD1 2367 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 ZIC3O60481 467 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 MPC2O95563 127 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 FOLR3P41439 243 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 SSBP1Q04837 148 aaKnown RBP13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 B3GNTL1Q67FW5 361 aaPredicted RBP13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 TCEAL6Q6IPX3 200 aa13.15□□□□□ -0.3
CLCNKA-201ENST00000331433 CHMP1BQ7LBR1 199 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms