RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 FAM103A1Q9BTL3 118 aaKnown RBP13.08□□□□□ -0.32
COL7A1-201ENST00000328333 WNK3Q9BYP7 1800 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 CNIH1O95406 144 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 NID1P14543 1247 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 CLDN12P56749 244 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 CACNG4Q9UBN1 327 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 RPLP1P05386 114 aaKnown RBP13.08□□□□□ -0.32
COL7A1-201ENST00000328333 PCSK6P29122 969 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 CSF2RBP32927 897 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 GNG4P50150 75 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 SOWAHCQ53LP3 525 aaPredicted RBP13.08□□□□□ -0.32
COL7A1-201ENST00000328333 ZDHHC22Q8N966 263 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 RPUSD4Q96CM3 377 aaKnown RBP13.08□□□□□ -0.32
COL7A1-201ENST00000328333 HRH1P35367 487 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 ZNF252P-AS1Q0IIN9 211 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 HNRNPA1L2Q32P51 320 aaKnown RBP13.08□□□□□ -0.32
COL7A1-201ENST00000328333 OR52I2Q8NH67 350 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 DCBLD2Q96PD2 775 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 DECR2Q9NUI1 292 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 KIAA1456Q9P272 454 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 OR2M5A3KFT3 312 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 EN2P19622 333 aaPredicted RBP13.08□□□□□ -0.32
COL7A1-201ENST00000328333 DRD1P21728 446 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 RBP2P50120 134 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 FAHD2BQ6P2I3 314 aaPredicted RBP13.08□□□□□ -0.32
COL7A1-201ENST00000328333 VRK2Q86Y07 508 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 ZNF573Q86YE8 665 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 FAHD2AQ96GK7 314 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 ZIC5Q96T25 663 aa13.08□□□□□ -0.32
COL7A1-201ENST00000328333 ZNF320A2RRD8 509 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 ADRA1AP35348 466 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 PMS2P11Q13670 270 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 ANGPTL5Q86XS5 388 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 ZNF845Q96IR2 970 aaPredicted RBP13.07□□□□□ -0.32
COL7A1-201ENST00000328333 DYNLRB1Q9NP97 96 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 APOBEC1P41238 236 aaKnown RBP13.07□□□□□ -0.32
COL7A1-201ENST00000328333 OR8B8Q15620 311 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 GLDNQ6ZMI3 551 aaPredicted RBP13.07□□□□□ -0.32
COL7A1-201ENST00000328333 ZNF429Q86V71 674 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 CDCA3Q99618 268 aaPredicted RBP13.07□□□□□ -0.32
COL7A1-201ENST00000328333 SIRT7Q9NRC8 400 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 DUXBA0A1W2PPF3 345 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 TCTAP57738 103 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 PJVKQ0ZLH3 352 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 RPEL1Q2QD12 228 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 CYHR1Q6ZMK1 362 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 LRRC18Q8N456 261 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 OR51F2Q8NH61 342 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 NEIL1Q96FI4 390 aaPredicted RBP13.07□□□□□ -0.32
COL7A1-201ENST00000328333 AKR1E2Q96JD6 320 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 SMDT1Q9H4I9 107 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 ZNF391Q9UJN7 358 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 LRRK1Q38SD2 2015 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 CAMKMTQ7Z624 323 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 SLCO4A1Q96BD0 722 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 AAMDCQ9H7C9 122 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 MED20Q9H944 212 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 NUMBLQ9Y6R0 609 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 NSG1A0A0A6YYJ2 146 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 KIAA1324LA8MWY0 1029 aaPredicted RBP13.07□□□□□ -0.32
COL7A1-201ENST00000328333 SLAMF8Q9P0V8 285 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 CLDN34H7C241 214 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 M0R1X1 148 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 SSR4P51571 173 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 ZNF66Q6ZN08 573 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 CREBZFQ9NS37 354 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 SH2D1BO14796 132 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 SLC35E2P0CK97 266 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 H1FNTQ75WM6 255 aaPredicted RBP13.07□□□□□ -0.32
COL7A1-201ENST00000328333 STPG2Q8N412 459 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 BCL2L2Q92843 193 aaPredicted RBP13.07□□□□□ -0.32
COL7A1-201ENST00000328333 RTL8AQ9BWD3 113 aa13.07□□□□□ -0.32
COL7A1-201ENST00000328333 OR5I1Q13606 314 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 ETFRF1Q6IPR1 90 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 OR10C1Q96KK4 312 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 GDF2Q9UK05 429 aaPredicted RBP13.06□□□□□ -0.32
COL7A1-201ENST00000328333 MED16Q9Y2X0 877 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 EVX2Q03828 476 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 NMNAT3Q96T66 252 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 DOCK4Q8N1I0 1966 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 IGFBP1P08833 259 aaPredicted RBP13.06□□□□□ -0.32
COL7A1-201ENST00000328333 C18orf21Q32NC0 220 aaPredicted RBP13.06□□□□□ -0.32
COL7A1-201ENST00000328333 ZNF528Q3MIS6 628 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 F13BP05160 661 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 TM4SF1P30408 202 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 SMIM21Q3B7S5 101 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 B3GNTL1Q67FW5 361 aaPredicted RBP13.06□□□□□ -0.32
COL7A1-201ENST00000328333 SLC26A10Q8NG04 563 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 VWA1Q6PCB0 445 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 MAMDC4Q6UXC1 1216 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 TAAR6Q96RI8 345 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 SLC25A19Q9HC21 320 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 CLDND1Q9NY35 253 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 SLC5A6Q9Y289 635 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 TMED3Q9Y3Q3 217 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 USP54Q70EL1 1684 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 LOC107986453A0A1B0GWG9 222 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 EPXP11678 715 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 PCBP4P57723 403 aaKnown RBP13.06□□□□□ -0.32
COL7A1-201ENST00000328333 WDFY2Q96P53 400 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms