RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 MFFQ9GZY8 342 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 ZNF768Q9H5H4 540 aaKnown RBP11.39□□□□□ -0.59
LINC00540-203ENST00000631321 IGHV3-20A0A0C4DH32 117 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 OR14I1A6ND48 311 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 METTL21EPA6NDL7 271 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 BDKRB2P30411 391 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 POU3F1Q03052 451 aaPredicted RBP11.38□□□□□ -0.59
LINC00540-203ENST00000631321 TLE3Q04726 772 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 ZMYND11Q15326 602 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 RHBDD2Q6NTF9 364 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 ZNF529Q6P280 563 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 PAPD4Q6PIY7 484 aaKnown RBP11.38□□□□□ -0.59
LINC00540-203ENST00000631321 CORO6Q6QEF8 472 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 C16orf47Q6ZP98 133 aaPredicted RBP11.38□□□□□ -0.59
LINC00540-203ENST00000631321 ANKRD37Q7Z713 158 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 ZNF584Q8IVC4 421 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 GALNT11Q8NCW6 608 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 OR5M8Q8NGP6 311 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 COQ8AQ8NI60 647 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 STT3BQ8TCJ2 826 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 UQCC2Q9BRT2 126 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 CNTD2Q9H8S5 307 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 FBLN5Q9UBX5 448 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 SRPK3Q9UPE1 567 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 B3GALT5Q9Y2C3 310 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 PCNX3Q9H6A9 2034 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 TMEM235A6NFC5 223 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 TMEM200CA6NKL6 621 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 DISC1C4P0D8 188 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 BPNT1O95861 308 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 FGF2P09038 288 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 ZNF28P17035 718 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 AGTR1P30556 359 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 CSNK1EP49674 416 aaKnown RBP11.38□□□□□ -0.59
LINC00540-203ENST00000631321 FOXF1Q12946 379 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 DHRS2Q13268 280 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 SMUG1Q53HV7 270 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 SLC25A53Q5H9E4 307 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 ARSKQ6UWY0 536 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.38□□□□□ -0.59
LINC00540-203ENST00000631321 PAQR4Q8N4S7 273 aaPredicted RBP11.38□□□□□ -0.59
LINC00540-203ENST00000631321 EIF4E3Q8N5X7 224 aaKnown RBP11.38□□□□□ -0.59
LINC00540-203ENST00000631321 SPERTQ8NA61 448 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 STEAP2Q8NFT2 490 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 OR1J2Q8NGS2 313 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 C11orf40Q8WZ69 217 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 RELTQ969Z4 430 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 LINC00052Q96N35 136 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 GAL3ST1Q99999 423 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 NUDT16L1Q9BRJ7 211 aaKnown RBP11.38□□□□□ -0.59
LINC00540-203ENST00000631321 PPA2Q9H2U2 334 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 MED29Q9NX70 200 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 ALKBH4Q9NXW9 302 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 CYB5R1Q9UHQ9 305 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 SESN1Q9Y6P5 492 aa11.38□□□□□ -0.59
LINC00540-203ENST00000631321 TTRP02766 147 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 HOXD4P09016 255 aaPredicted RBP11.37□□□□□ -0.59
LINC00540-203ENST00000631321 FREM3P0C091 2139 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 HLA-GP17693 338 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 FGL1Q08830 312 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 SHISA6Q6ZSJ9 500 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 HSD17B13Q7Z5P4 300 aaPredicted RBP11.37□□□□□ -0.59
LINC00540-203ENST00000631321 TMED4Q7Z7H5 227 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 SLC25A42Q86VD7 318 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 FAM46BQ96A09 425 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 FGGYQ96C11 551 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 SLAMF6Q96DU3 332 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 PRRT1Q99946 306 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 MRPL13Q9BYD1 178 aaKnown RBP11.37□□□□□ -0.59
LINC00540-203ENST00000631321 DUSP15Q9H1R2 295 aaPredicted RBP11.37□□□□□ -0.59
LINC00540-203ENST00000631321 TTYH1Q9H313 450 aaPredicted RBP11.37□□□□□ -0.59
LINC00540-203ENST00000631321 PFDN2Q9UHV9 154 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 A0A0D9SG52 128 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 C2orf72A6NCS6 295 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 KRBOX1C9JBD0 128 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 BET1O15155 118 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 SCGNO76038 276 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 IL2RAP01589 272 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 GIMD1P0DJR0 217 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 SLC25A4P12235 298 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 MGMTP16455 207 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 HOXD11P31277 338 aaPredicted RBP11.37□□□□□ -0.59
LINC00540-203ENST00000631321 GSK3AP49840 483 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 TAGLNQ01995 201 aaKnown RBP11.37□□□□□ -0.59
LINC00540-203ENST00000631321 UNC119Q13432 240 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 SQSTM1Q13501 440 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 RABEPKQ7Z6M1 372 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 FJX1Q86VR8 437 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 BEST3Q8N1M1 668 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 SLC25A45Q8N413 288 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 SLC22A24Q8N4F4 322 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 ZDHHC22Q8N966 263 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 ACBD4Q8NC06 268 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 OR1M1Q8NGA1 313 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 OR10S1Q8NGN2 331 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 OR1S1Q8NH92 325 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 DMRTA2Q96SC8 542 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 C1QTNF6Q9BXI9 259 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 PBOV1Q9GZY1 135 aa11.37□□□□□ -0.59
LINC00540-203ENST00000631321 ZNF576Q9H609 170 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms