RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 SLC6A7Q99884 636 aa10.05□□□□□ -0.8
UPF3B-204ENST00000619445 SPAG4Q9NPE6 437 aa10.05□□□□□ -0.8
UPF3B-204ENST00000619445 MED4Q9NPJ6 270 aa10.05□□□□□ -0.8
UPF3B-204ENST00000619445 EGFL7Q9UHF1 273 aa10.05□□□□□ -0.8
UPF3B-204ENST00000619445 OPN4Q9UHM6 478 aa10.05□□□□□ -0.8
UPF3B-204ENST00000619445 NUP50Q9UKX7 468 aa10.05□□□□□ -0.8
UPF3B-204ENST00000619445 NOP16Q9Y3C1 178 aaKnown RBP10.05□□□□□ -0.8
UPF3B-204ENST00000619445 UNC119BA6NIH7 251 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 ARPC3O15145 178 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 SCG5P05408 212 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 ZNF12P17014 697 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 ZNF154Q13106 437 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 ZNF181Q2M3W8 571 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 SMARCD3Q6STE5 483 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 BTNL3Q6UXE8 466 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 DOK3Q7L591 496 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 ATG16L2Q8NAA4 619 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 OR8G5Q8NG78 346 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 ERGIC1Q969X5 290 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 HCAR1Q9BXC0 346 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 PLA2G12AQ9BZM1 189 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 RERGLQ9H628 205 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 DCAF13Q9NV06 445 aaKnown RBP10.04□□□□□ -0.8
UPF3B-204ENST00000619445 NDUFAF4Q9P032 175 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 MIOXQ9UGB7 285 aa10.04□□□□□ -0.8
UPF3B-204ENST00000619445 COA3Q9Y2R0 106 aaPredicted RBP10.04□□□□□ -0.8
UPF3B-204ENST00000619445 F5H0A9 414 aaPredicted RBP10.03□□□□□ -0.8
UPF3B-204ENST00000619445 TMEM178BH3BS89 294 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 SOCS2O14508 198 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 SPRY1O43609 319 aaPredicted RBP10.03□□□□□ -0.8
UPF3B-204ENST00000619445 IDH3BO43837 385 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 RGS9O75916 674 aaPredicted RBP10.03□□□□□ -0.8
UPF3B-204ENST00000619445 RENP00797 406 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 PRDX6P30041 224 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 SLC6A6P31641 620 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 OMPP47874 163 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 PSME3P61289 254 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 UBA52P62987 128 aaKnown RBP10.03□□□□□ -0.8
UPF3B-204ENST00000619445 HIST1H3AP68431 136 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 SF3A3Q12874 501 aaKnown RBP eCLIP10.03□□□□□ -0.8
UPF3B-204ENST00000619445 MALLQ13021 153 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 ZMYND11Q15326 602 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 HIST2H3PS2Q5TEC6 136 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 C1orf94Q6P1W5 598 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 LRRN1Q6UXK5 716 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 Q6ZR03 302 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 HIST2H3AQ71DI3 136 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 NLRC3Q7RTR2 1065 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 JAZF1Q86VZ6 243 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 CELF2-AS1Q8N7Q2 184 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 DEFB108BQ8NET1 73 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 ITLN1Q8WWA0 313 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 DVL3Q92997 716 aaPredicted RBP10.03□□□□□ -0.8
UPF3B-204ENST00000619445 DHRS1Q96LJ7 313 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 SLC22A4Q9H015 551 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 NUAK2Q9H093 628 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 GORASP2Q9H8Y8 452 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 GCM1Q9NP62 436 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 KCNG2Q9UJ96 466 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 INSIG2Q9Y5U4 225 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 IER3IP1Q9Y5U9 82 aa10.03□□□□□ -0.8
UPF3B-204ENST00000619445 IQCF6A8MYZ5 107 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 RER1O15258 196 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 IRF2P14316 349 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 ZNF26P17031 533 aaPredicted RBP10.02□□□□□ -0.8
UPF3B-204ENST00000619445 FUT4P22083 530 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 PRTN3P24158 256 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 ZFP36P26651 326 aaKnown RBP10.02□□□□□ -0.8
UPF3B-204ENST00000619445 NOS3P29474 1203 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 MDH1P40925 334 aaKnown RBP10.02□□□□□ -0.8
UPF3B-204ENST00000619445 MTNR1AP48039 350 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 MMP16P51512 607 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 COX10Q12887 443 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 TUSC1Q2TAM9 212 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 CCDC92Q53HC0 331 aaPredicted RBP10.02□□□□□ -0.8
UPF3B-204ENST00000619445 GLYATQ6IB77 296 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 ZDHHC22Q8N966 263 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 MCUR1Q96AQ8 359 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 MEGF10Q96KG7 1140 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 C7orf34Q96L11 122 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 ERMAPQ96PL5 475 aaPredicted RBP10.02□□□□□ -0.8
UPF3B-204ENST00000619445 SIGLEC11Q96RL6 698 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 SLC30A2Q9BRI3 323 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 CDADC1Q9BWV3 514 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 SSBP3Q9BWW4 388 aaPredicted RBP10.02□□□□□ -0.8
UPF3B-204ENST00000619445 TMEM100Q9NV29 134 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 MAGEL2Q9UJ55 1249 aa10.02□□□□□ -0.8
UPF3B-204ENST00000619445 TRBV4-1A0A0J9YWV2 114 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 A0A1B0GWJ7 208 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 CEACAM18A8MTB9 384 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 CLDN34H7C241 214 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 GADD45GO95257 159 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 HKR1P10072 659 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 RPS2P15880 293 aaKnown RBP10.01□□□□□ -0.81
UPF3B-204ENST00000619445 NCK1P16333 377 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 FPR3P25089 353 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 GATA4P43694 442 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 CENPAP49450 140 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 BPIFB3P59826 476 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 KCNJ8Q15842 424 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms