RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 MEPCEQ7L2J0 689 aaKnown RBP14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 GALNT4Q8N4A0 578 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 OR8J1Q8NGP2 316 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 OR1J1Q8NGS3 322 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 FAM81AQ8TBF8 368 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 ST7LQ8TDW4 575 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 CACNG6Q9BXT2 260 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 MRPL37Q9BZE1 423 aaKnown RBP14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 GSX2Q9BZM3 304 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 CXXC4Q9H2H0 198 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 PLK3Q9H4B4 646 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 TBCCD1Q9NVR7 557 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 GRIP1Q9Y3R0 1128 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 DLGAP1O14490 977 aa14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 CASQ2O14958 399 aaPredicted RBP14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 PTH2RP49190 550 aa14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 ARL9Q6T311 187 aa14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 SHFQ7M4L6 423 aa14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 LRRC75A-AS1Q8N1F1 130 aa14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 ABHD4Q8TB40 342 aa14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 NRG4Q8WWG1 115 aa14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 PERPQ96FX8 193 aa14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 DCLRE1CQ96SD1 692 aaKnown RBP14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 ELOVL3Q9HB03 270 aa14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 DDX28Q9NUL7 540 aaKnown RBP14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 SMPD3Q9NY59 655 aaPredicted RBP14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 H2AFY2Q9P0M6 372 aaPredicted RBP14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 FZR1Q9UM11 496 aa14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 OTOGQ6ZRI0 2925 aa14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 PRRC2AP48634 2157 aaKnown RBP14.22□□□□□ -0.13
CCDC28A-202ENST00000611852 BMP4P12644 408 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 ZNF250P15622 560 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 NAA10P41227 235 aaPredicted RBP14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 EVX1P49640 407 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 SNRPD2P62316 118 aaKnown RBP14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 EIF2B1Q14232 305 aaKnown RBP14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 TESK1Q15569 626 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 OGFRL1Q5TC84 451 aaPredicted RBP14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 LCN1P1Q5VSP4 162 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 LRP11Q86VZ4 500 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 C1orf174Q8IYL3 243 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 PACRGLQ8N7B6 248 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 OTOSQ8NHW6 89 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 TRUB1Q8WWH5 349 aaKnown RBP14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 UBE2FQ969M7 185 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 SLAMF6Q96DU3 332 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 RDH12Q96NR8 316 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 DOK1Q99704 481 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 SYT3Q9BQG1 590 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 ABHD6Q9BV23 337 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 C8orf4Q9NR00 106 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 FAM118AQ9NWS6 357 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 IMPAD1Q9NX62 359 aa14.21□□□□□ -0.13
CCDC28A-202ENST00000611852 SLC22A31A6NKX4 558 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 F5H5K5 113 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 H7C417 338 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 PPP1CBP62140 327 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 GGTLC2Q14390 218 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 SPATA46Q5T0L3 261 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 SLC16A9Q7RTY1 509 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 GID4Q8IVV7 300 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 ZNF454Q8N9F8 522 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 SLC25A40Q8TBP6 338 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 TRMT61AQ96FX7 289 aaKnown RBP14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 MARS2Q96GW9 593 aaKnown RBP14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 AMELYQ99218 206 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 OR2J1Q9GZK6 312 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 MYEF2Q9P2K5 600 aaKnown RBP14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 DUSP13Q9UII6 198 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 GMPPBQ9Y5P6 360 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 PMF1-BGLAPU3KQ54 211 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 IGLV3-9A0A075B6K5 115 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 LOC100130705A0A1B0GUX0 176 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 ZNF878C9JN71 531 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 SLC16A6O15403 523 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 NDUFS7O75251 213 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 CLPTM1O96005 669 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 MRPL3P09001 348 aaKnown RBP14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 ACSM4P0C7M7 580 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 OTX1P32242 354 aaPredicted RBP14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 RGS6P49758 472 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 ATP5J2P56134 94 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 SNRPGP62308 76 aaKnown RBP14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 SYNPRQ8TBG9 265 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 RNF133Q8WVZ7 376 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 IPCEF1Q8WWN9 437 aaPredicted RBP14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 ZNF582Q96NG8 517 aaPredicted RBP14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 COPS4Q9BT78 406 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 CENPMQ9NSP4 180 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 HAO2Q9NYQ3 351 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 DNAJC27Q9NZQ0 273 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 STARD10Q9Y365 291 aa14.2□□□□□ -0.14
CCDC28A-202ENST00000611852 J3QW42 95 aa14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 M0R135 149 aa14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 LYNP07948 512 aa14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 HCCSP53701 268 aa14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 TPTEP56180 551 aa14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 KLF3P57682 345 aaPredicted RBP14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 ZNF718Q3SXZ3 478 aa14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 SLC25A30Q5SVS4 291 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms