RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 OR4K13Q8NH42 304 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 NANPQ8TBE9 248 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 PTP4A1Q93096 173 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 MCUR1Q96AQ8 359 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 SAMD8Q96LT4 415 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 UBAP1Q9NZ09 502 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 PTTG3PQ9NZH4 202 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 POLR1DQ9Y2S0 133 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 LHFPL6Q9Y693 200 aa17.29■□□□□ 0.36
SHMT1-209ENST00000582653 IGLV1-36A0A0B4J1U3 117 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 RGS9O75916 674 aaPredicted RBP17.28■□□□□ 0.36
SHMT1-209ENST00000582653 SBK2P0C263 348 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 HIST1H1CP16403 213 aaKnown RBP17.28■□□□□ 0.36
SHMT1-209ENST00000582653 CFPP27918 469 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 CRABP1P29762 137 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 SLC6A6P31641 620 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 COMPP49747 757 aaPredicted RBP17.28■□□□□ 0.36
SHMT1-209ENST00000582653 HIST1H3AP68431 136 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 HIST2H3PS2Q5TEC6 136 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 HIST2H3AQ71DI3 136 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 PIGWQ7Z7B1 504 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 DEFB107AQ8IZN7 70 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 OR5AS1Q8N127 324 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 FAM216AQ8WUB2 273 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 JMJD8Q96S16 334 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 IFT27Q9BW83 186 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 FN3KQ9H479 309 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 C7orf69Q9H7B7 122 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 ARL2BPQ9Y2Y0 163 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 NPTNQ9Y639 398 aa17.28■□□□□ 0.36
SHMT1-209ENST00000582653 PPIAL4EA0A075B759 164 aa17.27■□□□□ 0.36
SHMT1-209ENST00000582653 PPIAL4CA0A0B4J2A2 164 aa17.27■□□□□ 0.36
SHMT1-209ENST00000582653 PPIAL4DF5H284 164 aa17.27■□□□□ 0.36
SHMT1-209ENST00000582653 TRIM77I1YAP6 450 aa17.27■□□□□ 0.36
SHMT1-209ENST00000582653 PPIAL4FP0DN26 164 aa17.27■□□□□ 0.36
SHMT1-209ENST00000582653 FPR3P25089 353 aa17.27■□□□□ 0.36
SHMT1-209ENST00000582653 LCN2P80188 198 aa17.27■□□□□ 0.36
SHMT1-209ENST00000582653 DNM1P34Q6PK57 102 aa17.27■□□□□ 0.36
SHMT1-209ENST00000582653 JAZF1Q86VZ6 243 aa17.27■□□□□ 0.36
SHMT1-209ENST00000582653 GJC3Q8NFK1 279 aa17.27■□□□□ 0.36
SHMT1-209ENST00000582653 ST7LQ8TDW4 575 aa17.27■□□□□ 0.36
SHMT1-209ENST00000582653 ITLN1Q8WWA0 313 aa17.27■□□□□ 0.36
SHMT1-209ENST00000582653 IL1RAPQ9NPH3 570 aa17.27■□□□□ 0.36
SHMT1-209ENST00000582653 RPRD1BQ9NQG5 326 aaKnown RBP17.27■□□□□ 0.36
SHMT1-209ENST00000582653 TMEM106BQ9NUM4 274 aa17.27■□□□□ 0.36
SHMT1-209ENST00000582653 TMCC3Q9ULS5 477 aa17.27■□□□□ 0.36
SHMT1-209ENST00000582653 TMEM89A2RUT3 159 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 ARPC3O15145 178 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 RENP00797 406 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 ADRA2CP18825 462 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 TNFRSF1AP19438 455 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 GSSP48637 474 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 MXRA7P84157 204 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 RSPO1Q2MKA7 263 aaPredicted RBP17.26■□□□□ 0.35
SHMT1-209ENST00000582653 SLC35F1Q5T1Q4 408 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 OR2T2Q6IF00 324 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 C16orf89Q6UX73 402 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 LINC00346Q8IVM7 164 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 ZDHHC21Q8IVQ6 265 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 SDR9C7Q8NEX9 313 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 SLC26A10Q8NG04 563 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 GNPDA2Q8TDQ7 276 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 COG8Q96MW5 612 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 SUCNR1Q9BXA5 334 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 OPN4Q9UHM6 478 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 TANC2Q9HCD6 1990 aa17.26■□□□□ 0.35
SHMT1-209ENST00000582653 OR6C68A6NDL8 312 aa17.25■□□□□ 0.35
SHMT1-209ENST00000582653 FOXH1O75593 365 aa17.25■□□□□ 0.35
SHMT1-209ENST00000582653 IGHV2-70P01814 119 aa17.25■□□□□ 0.35
SHMT1-209ENST00000582653 RAC2P15153 192 aa17.25■□□□□ 0.35
SHMT1-209ENST00000582653 TNFSF4P23510 183 aa17.25■□□□□ 0.35
SHMT1-209ENST00000582653 ZFP36P26651 326 aaKnown RBP17.25■□□□□ 0.35
SHMT1-209ENST00000582653 NOS3P29474 1203 aa17.25■□□□□ 0.35
SHMT1-209ENST00000582653 PGBD2Q6P3X8 592 aa17.25■□□□□ 0.35
SHMT1-209ENST00000582653 CYP2R1Q6VVX0 501 aa17.25■□□□□ 0.35
SHMT1-209ENST00000582653 CFAP77Q6ZQR2 320 aa17.25■□□□□ 0.35
SHMT1-209ENST00000582653 ZNF283Q8N7M2 679 aa17.25■□□□□ 0.35
SHMT1-209ENST00000582653 ATG16L2Q8NAA4 619 aa17.25■□□□□ 0.35
SHMT1-209ENST00000582653 OR2V2Q96R30 315 aa17.25■□□□□ 0.35
SHMT1-209ENST00000582653 COQ7Q99807 217 aa17.25■□□□□ 0.35
SHMT1-209ENST00000582653 EGLN3Q9H6Z9 239 aa17.25■□□□□ 0.35
SHMT1-209ENST00000582653 WDR76Q9H967 626 aa17.25■□□□□ 0.35
SHMT1-209ENST00000582653 IL19Q9UHD0 177 aa17.25■□□□□ 0.35
SHMT1-209ENST00000582653 DCTN3O75935 186 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 FPR2P25090 351 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 IFNGR2P38484 337 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 RGS6P49758 472 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 PRSS12P56730 875 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 COX10Q12887 443 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 TSPAN31Q12999 210 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 CLEC12AQ5QGZ9 265 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 SLC18B1Q6NT16 456 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 PGM2L1Q6PCE3 622 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 FBXW12Q6X9E4 464 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 ZNF620Q6ZNG0 422 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 NAA40Q86UY6 237 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 ZBTB46Q86UZ6 589 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 LRRC28Q86X40 367 aaPredicted RBP17.24■□□□□ 0.35
SHMT1-209ENST00000582653 OR52E2Q8NGJ4 325 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 OR5L1Q8NGL2 311 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms