RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 IKZF1Q13422 519 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 C1orf100Q5SVJ3 147 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 THEM4Q5T1C6 240 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 C3orf33Q6P1S2 294 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 ADGRE4PQ86SQ3 457 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 OR10H5Q8NGA6 315 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 OR6N1Q8NGY5 312 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 NAT6Q93015 286 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 SLAMF6Q96DU3 332 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 SPACA9Q96E40 222 aaPredicted RBP8.98□□□□□ -0.97
VPS53-220ENST00000576149 RASL10BQ96S79 203 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 GINS4Q9BRT9 223 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 DEFB126Q9BYW3 111 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 CA10Q9NS85 328 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 FBXL2Q9UKC9 423 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 ADAMTS9Q9P2N4 1935 aa8.98□□□□□ -0.97
VPS53-220ENST00000576149 MEIS3P1A6NDR6 274 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 EIF1AYO14602 144 aaKnown RBP8.97□□□□□ -0.97
VPS53-220ENST00000576149 TOXO94900 526 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 OR2A4O95047 310 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 CD3DP04234 171 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 GIPP09681 153 aaPredicted RBP8.97□□□□□ -0.97
VPS53-220ENST00000576149 ACSM4P0C7M7 580 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 LAP3P28838 519 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 HOXA6P31267 233 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 PSMA6P60900 246 aaKnown RBP8.97□□□□□ -0.97
VPS53-220ENST00000576149 B2MP61769 119 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 LIN54Q6MZP7 749 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 UEVLDQ8IX04 471 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 OR51S1Q8NGJ8 323 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 SEH1LQ96EE3 360 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 OR2A7Q96R45 310 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 CHIAQ9BZP6 476 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 C1orf198Q9H425 327 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 RHBDD3Q9Y3P4 386 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 A0A0A6YYH2 397 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 OR2M5A3KFT3 312 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 A6NJ64 397 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 SLC22A5O76082 557 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 TTRP02766 147 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 OPN1LWP04000 364 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 LPLP06858 475 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 FGF5P12034 268 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 RPS2P15880 293 aaKnown RBP8.97□□□□□ -0.97
VPS53-220ENST00000576149 TMEM11P17152 192 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 SSTR2P30874 369 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 ACTBP60709 375 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 ACTG1P63261 375 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 C21orf62-AS1Q17RA5 79 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 PHF19Q5T6S3 580 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 STEAP1BQ6NZ63 245 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 FAM198BQ6UWH4 519 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 ELMOD2Q8IZ81 293 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 FAM109AQ8N4B1 249 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 JAGN1Q8N5M9 183 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 WDSUB1Q8N9V3 476 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 OR10S1Q8NGN2 331 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 OR5M1Q8NGP8 315 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 ELP5Q8TE02 316 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 PTX4Q96A99 478 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 FOXRED1Q96CU9 486 aaPredicted RBP8.97□□□□□ -0.97
VPS53-220ENST00000576149 ZPBPQ9BS86 351 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 TMEM185BQ9H7F4 350 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 WDR54Q9H977 334 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 SCPEP1Q9HB40 452 aa8.97□□□□□ -0.97
VPS53-220ENST00000576149 A0A1W2PNR3 127 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 TRAF3IP2O43734 574 aaPredicted RBP8.96□□□□□ -0.97
VPS53-220ENST00000576149 NOS1APO75052 506 aaPredicted RBP8.96□□□□□ -0.97
VPS53-220ENST00000576149 PGA4P0DJD7 388 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 PGA3P0DJD8 388 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 EIF1AXP47813 144 aaKnown RBP8.96□□□□□ -0.97
VPS53-220ENST00000576149 CLRN1P58418 232 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 RAP2BP61225 183 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 DHODHQ02127 395 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 KLHL24Q6TFL4 600 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 ZNF813Q6ZN06 617 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 ZNF627Q7L945 461 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 UBALD2Q8IYN6 164 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 GABRG1Q8N1C3 465 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 FTMTQ8N4E7 242 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 FADS6Q8N9I5 356 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 UXS1Q8NBZ7 420 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 NOXO1Q8NFA2 376 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 OR4D6Q8NGJ1 314 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 OR52B4Q8NGK2 314 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 OR8S1Q8NH09 359 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 DVL3Q92997 716 aaPredicted RBP8.96□□□□□ -0.97
VPS53-220ENST00000576149 FGGYQ96C11 551 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 PBOV1Q9GZY1 135 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 CRLF2Q9HC73 371 aa8.96□□□□□ -0.97
VPS53-220ENST00000576149 ASCC3Q8N3C0 2202 aaKnown RBP8.96□□□□□ -0.97
VPS53-220ENST00000576149 LOC102723996A0A087X1L8 192 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 UBE2QL1A1L167 161 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 ZNF814B7Z6K7 855 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 MPC2O95563 127 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 IGHG1P01857 330 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 RLN1P04808 185 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 S100A6P06703 90 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 MELTFP08582 738 aa8.96□□□□□ -0.98
VPS53-220ENST00000576149 OR3A3P47888 321 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms