RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 SLC7A13Q8TCU3 470 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 PPP1R36Q96LQ0 422 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 SSX3Q99909 188 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 MEAF6Q9HAF1 191 aa14.73□□□□□ -0.05
CLK3-227ENST00000570296 HUWE1Q7Z6Z7 4374 aaKnown RBP14.73□□□□□ -0.05
CLK3-227ENST00000570296 STARD9Q9P2P6 4700 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 J3QW42 95 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 FMO6PO60774 539 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 FAM20BO75063 409 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 ZCCHC18P0CG32 403 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 PF4V1P10720 104 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 ZNF26P17031 533 aaPredicted RBP14.72□□□□□ -0.05
CLK3-227ENST00000570296 UGT2B15P54855 530 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 UFM1P61960 85 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 FMODQ06828 376 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 LY6EQ16553 131 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 HHATQ5VTY9 493 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 OR2T2Q6IF00 324 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 SLC25A47Q6Q0C1 308 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 RANBP3LQ86VV4 465 aaPredicted RBP14.72□□□□□ -0.05
CLK3-227ENST00000570296 ZNF583Q96ND8 569 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 WACQ9BTA9 647 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 SIRT7Q9NRC8 400 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 C20orf141Q9NUB4 165 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 ONECUT1Q9UBC0 465 aa14.72□□□□□ -0.05
CLK3-227ENST00000570296 C12orf71A8MTZ7 269 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 C5orf58C9J3I9 102 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 DVL1O14640 695 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 TPST2O60704 377 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 PF4P02776 101 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 HTR5AP47898 357 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 NME5P56597 212 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 ACSM1Q08AH1 577 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 AANATQ16613 207 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 INTS11Q5TA45 600 aaKnown RBP14.71□□□□□ -0.05
CLK3-227ENST00000570296 ZNF613Q6PF04 617 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 FOXL2NBQ6ZUU3 175 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 Q8N2B8 174 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 PCYOX1LQ8NBM8 494 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 MAL2Q969L2 176 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 SPATA5L1Q9BVQ7 753 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 EVA1AQ9H8M9 152 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 ZNF702PQ9H963 129 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 RNF7Q9UBF6 113 aa14.71□□□□□ -0.05
CLK3-227ENST00000570296 TRAV38-1A0A0B4J264 116 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 A0A1W2PRD5 423 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 A0A1W2PRF3 423 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 A0A1W2PRM7 423 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 BLOC1S5-TXNDC5H3BN57 136 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 CHP2O43745 196 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 TPST1O60507 370 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 FCN3O75636 299 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 NUDT7P0C024 238 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 UMPSP11172 480 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 LBPP18428 481 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 IL12AP29459 219 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 GUCA1AP43080 201 aaPredicted RBP14.7□□□□□ -0.06
CLK3-227ENST00000570296 RGS6P49758 472 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 RAD23AP54725 363 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 CD47Q08722 323 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 MAB21L1Q13394 359 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 ENDOGQ14249 297 aaKnown RBP14.7□□□□□ -0.06
CLK3-227ENST00000570296 ARMC4Q5T2S8 1044 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 SFRP4Q6FHJ7 346 aaPredicted RBP14.7□□□□□ -0.06
CLK3-227ENST00000570296 KRT73Q86Y46 540 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 SLC30A8Q8IWU4 369 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 LY6G5BQ8NDX9 201 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 RASD2Q96D21 266 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 MAP6Q96JE9 813 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 ECSITQ9BQ95 431 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 TMEM100Q9NV29 134 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 RYR1P21817 5038 aa14.7□□□□□ -0.06
CLK3-227ENST00000570296 IQCF6A8MYZ5 107 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 ANGPTL7O43827 346 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 DOK2O60496 412 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 ANP32DO95626 131 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 BMP2P12643 396 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 MSR1P21757 451 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 FPR3P25089 353 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 CD200P41217 278 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 UBE2E1P51965 193 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 RPL18Q07020 188 aaKnown RBP14.69□□□□□ -0.06
CLK3-227ENST00000570296 LRRC75BQ2VPJ9 315 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 NKAPLQ5M9Q1 402 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 OR51G2Q8NGK0 314 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 OR5L1Q8NGL2 311 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 ST8SIA4Q92187 359 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 HDAC2Q92769 488 aaKnown RBP14.69□□□□□ -0.06
CLK3-227ENST00000570296 DDOQ99489 341 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 WNT10AQ9GZT5 417 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 INIPQ9NRY2 104 aa14.69□□□□□ -0.06
CLK3-227ENST00000570296 A0A1W2PRX2 142 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 MEGF11A6BM72 1044 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 CHST1O43916 411 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 LYL1P12980 280 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 HOXA4Q00056 320 aaPredicted RBP14.68□□□□□ -0.06
CLK3-227ENST00000570296 PRB3Q04118 309 aaPredicted RBP14.68□□□□□ -0.06
CLK3-227ENST00000570296 SCRN3Q0VDG4 424 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 KLRD1Q13241 179 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 RGNQ15493 299 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms