RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 FGF20Q9NP95 211 aaPredicted RBP8.02□□□□□ -1.13
VPS35-211ENST00000569950 CLN6Q9NWW5 311 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 SLCO1C1Q9NYB5 712 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 ZNF319Q9P2F9 582 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 MRM2Q9UI43 246 aaKnown RBP8.02□□□□□ -1.13
VPS35-211ENST00000569950 PSORS1C1Q9UIG5 152 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 FBXL3Q9UKT7 428 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 MYO9AB2RTY4 2548 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 A0A1W2PQL4 384 aaPredicted RBP8.01□□□□□ -1.13
VPS35-211ENST00000569950 TRIM64A6NGJ6 449 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 DOK2O60496 412 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 RAB36O95755 333 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 ACSM4P0C7M7 580 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 LIMS3P0CW19 117 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 LIMS4P0CW20 117 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 COX6B1P14854 86 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 ZNF823P16415 610 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 PTAFRP25105 342 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 STOMP27105 288 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 HOXC12P31275 282 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 HSPA13P48723 471 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 PCBD1P61457 104 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 ERVS71-1P61550 626 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 RPS7P62081 194 aaKnown RBP8.01□□□□□ -1.13
VPS35-211ENST00000569950 EIF2B1Q14232 305 aaKnown RBP8.01□□□□□ -1.13
VPS35-211ENST00000569950 LCN1P1Q5VSP4 162 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 ADAM5Q6NVV9 412 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 TMEM53Q6P2H8 277 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 TMEM154Q6P9G4 183 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 TMEM108Q6UXF1 575 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 RFPL4BQ6ZWI9 263 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 RHOUQ7L0Q8 258 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 SLC35F2Q8IXU6 374 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 ZNF454Q8N9F8 522 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 SLC30A7Q8NEW0 376 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 OR10H5Q8NGA6 315 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 TMEM171Q8WVE6 324 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 RFKQ969G6 155 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 PIK3IP1Q96FE7 263 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 ATF6BQ99941 703 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 TTTY10Q9BZA0 68 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 HDHD2Q9H0R4 259 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 DUSP21Q9H596 190 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 CCNB1IP1Q9NPC3 277 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 PLEK2Q9NYT0 353 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS35-211ENST00000569950 LRRC42Q9Y546 428 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 MAST4O15021 2626 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 ARID1AO14497 2285 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 VPS13CQ709C8 3753 aa8.01□□□□□ -1.13
VPS35-211ENST00000569950 CYSRT1A8MQ03 144 aa8□□□□□ -1.13
VPS35-211ENST00000569950 SLC1A7O00341 560 aa8□□□□□ -1.13
VPS35-211ENST00000569950 GPRIN2O60269 458 aa8□□□□□ -1.13
VPS35-211ENST00000569950 SMPD2O60906 423 aa8□□□□□ -1.13
VPS35-211ENST00000569950 GOSR1O95249 250 aa8□□□□□ -1.13
VPS35-211ENST00000569950 PNPP00491 289 aa8□□□□□ -1.13
VPS35-211ENST00000569950 DANCRP0C864 163 aa8□□□□□ -1.13
VPS35-211ENST00000569950 PIPP12273 146 aaPredicted RBP8□□□□□ -1.13
VPS35-211ENST00000569950 NR4A1P22736 598 aa8□□□□□ -1.13
VPS35-211ENST00000569950 PAX7P23759 505 aa8□□□□□ -1.13
VPS35-211ENST00000569950 CRHBPP24387 322 aa8□□□□□ -1.13
VPS35-211ENST00000569950 PCSK6P29122 969 aa8□□□□□ -1.13
VPS35-211ENST00000569950 HTR5AP47898 357 aa8□□□□□ -1.13
VPS35-211ENST00000569950 CXCR4P61073 352 aa8□□□□□ -1.13
VPS35-211ENST00000569950 SLC35A2P78381 396 aa8□□□□□ -1.13
VPS35-211ENST00000569950 RAB40BQ12829 278 aa8□□□□□ -1.13
VPS35-211ENST00000569950 MST1LQ2TV78 715 aa8□□□□□ -1.13
VPS35-211ENST00000569950 CDONQ4KMG0 1287 aa8□□□□□ -1.13
VPS35-211ENST00000569950 LRRN1Q6UXK5 716 aa8□□□□□ -1.13
VPS35-211ENST00000569950 ZNF704Q6ZNC4 412 aaPredicted RBP8□□□□□ -1.13
VPS35-211ENST00000569950 SPATC1Q76KD6 591 aa8□□□□□ -1.13
VPS35-211ENST00000569950 OR8B4Q96RC9 309 aa8□□□□□ -1.13
VPS35-211ENST00000569950 TBX5Q99593 518 aa8□□□□□ -1.13
VPS35-211ENST00000569950 C1QTNF5Q9BXJ0 243 aa8□□□□□ -1.13
VPS35-211ENST00000569950 LIME1Q9H400 295 aa8□□□□□ -1.13
VPS35-211ENST00000569950 C1orf198Q9H425 327 aa8□□□□□ -1.13
VPS35-211ENST00000569950 ESRP2Q9H6T0 727 aaKnown RBP8□□□□□ -1.13
VPS35-211ENST00000569950 RNF121Q9H920 327 aa8□□□□□ -1.13
VPS35-211ENST00000569950 MOV10Q9HCE1 1003 aaKnown RBP8□□□□□ -1.13
VPS35-211ENST00000569950 H2AFY2Q9P0M6 372 aaPredicted RBP8□□□□□ -1.13
VPS35-211ENST00000569950 POLR1DQ9Y2S0 133 aa8□□□□□ -1.13
VPS35-211ENST00000569950 RNF115Q9Y4L5 304 aa8□□□□□ -1.13
VPS35-211ENST00000569950 LRP12Q9Y561 859 aa8□□□□□ -1.13
VPS35-211ENST00000569950 ITPR3Q14573 2671 aa8□□□□□ -1.13
VPS35-211ENST00000569950 ZANQ9Y493 2812 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 CELSR1Q9NYQ6 3014 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 TMEM129A0AVI4 362 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 C5orf49A4QMS7 147 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 ZNF878C9JN71 531 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 PSMD9O00233 223 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 FAM20BO75063 409 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 LALBAP00709 142 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 CD8AP01732 235 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 CD3EP07766 207 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 LYNP07948 512 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 OR2T7P0C7T2 308 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 C21orf33P30042 268 aaPredicted RBP7.99□□□□□ -1.13
VPS35-211ENST00000569950 GUCA1AP43080 201 aaPredicted RBP7.99□□□□□ -1.13
VPS35-211ENST00000569950 ETV1P50549 477 aa7.99□□□□□ -1.13
VPS35-211ENST00000569950 NR1H2P55055 460 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms