RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ZNF275Q9NSD4 429 aaPredicted RBP13.02□□□□□ -0.33
VPS35-210ENST00000568784 SNAPC5O75971 98 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 SERPINA5P05154 406 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 HSD11B1P28845 292 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 CASRP41180 1078 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 ARL11Q969Q4 196 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 SLC19A3Q9BZV2 496 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 RASL12Q9NYN1 266 aa13.02□□□□□ -0.33
VPS35-210ENST00000568784 ADAP1O75689 374 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 S100A6P06703 90 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 LY6G6FQ5SQ64 297 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 ANGPTL5Q86XS5 388 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 C12orf57Q99622 126 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 RTN4RQ9BZR6 473 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 TRAV36DV7A0A075B6V5 113 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 LOC101059948A0A1B0GTJ6 334 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 CTHP32929 405 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 PPIAP62937 165 aaKnown RBP13.01□□□□□ -0.33
VPS35-210ENST00000568784 SKP2Q13309 424 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 OR4K15Q8NH41 348 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 CNTNAP3BQ96NU0 1288 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 PDE7BQ9NP56 450 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 TMEM184BQ9Y519 407 aaPredicted RBP13.01□□□□□ -0.33
VPS35-210ENST00000568784 KIR2DS5A0A0G2JLQ3 304 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 A0A0G2JNG1 304 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 TMEM200CA6NKL6 621 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 KIR2DS3K7RE56 304 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 OR2F2O95006 317 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 GLI4P10075 376 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 CEBPGP53567 150 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 RPS4XP62701 263 aaKnown RBP13.01□□□□□ -0.33
VPS35-210ENST00000568784 OR2F1Q13607 317 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 KIR2DS5Q14953 304 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 EBPQ15125 230 aaKnown RBP13.01□□□□□ -0.33
VPS35-210ENST00000568784 DEFB133Q30KQ1 61 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 EXOSC6Q5RKV6 272 aaKnown RBP13.01□□□□□ -0.33
VPS35-210ENST00000568784 TMEM92Q6UXU6 159 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 PUSL1Q8N0Z8 303 aaKnown RBP13.01□□□□□ -0.33
VPS35-210ENST00000568784 KLHDC7BQ96G42 594 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 NUDT9Q9BW91 350 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 MFRPQ9BY79 579 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 PTGES2Q9H7Z7 377 aa13.01□□□□□ -0.33
VPS35-210ENST00000568784 ZNF701Q9NV72 531 aaPredicted RBP13.01□□□□□ -0.33
VPS35-210ENST00000568784 VSX1Q9NZR4 365 aaPredicted RBP13.01□□□□□ -0.33
VPS35-210ENST00000568784 TRBV5-7A0A0A0MS05 114 aa13□□□□□ -0.33
VPS35-210ENST00000568784 ZNF878C9JN71 531 aa13□□□□□ -0.33
VPS35-210ENST00000568784 DNASE2O00115 360 aaPredicted RBP13□□□□□ -0.33
VPS35-210ENST00000568784 ASAH2BP0C7U1 165 aa13□□□□□ -0.33
VPS35-210ENST00000568784 TPT1P13693 172 aaKnown RBP13□□□□□ -0.33
VPS35-210ENST00000568784 DHODHQ02127 395 aa13□□□□□ -0.33
VPS35-210ENST00000568784 CCINQ13939 588 aa13□□□□□ -0.33
VPS35-210ENST00000568784 ZNF684Q5T5D7 378 aa13□□□□□ -0.33
VPS35-210ENST00000568784 SLC29A4Q7RTT9 530 aa13□□□□□ -0.33
VPS35-210ENST00000568784 ABHD12BQ7Z5M8 362 aaPredicted RBP13□□□□□ -0.33
VPS35-210ENST00000568784 OR52N4Q8NGI2 321 aa13□□□□□ -0.33
VPS35-210ENST00000568784 EDARQ9UNE0 448 aa13□□□□□ -0.33
VPS35-210ENST00000568784 MEGF11A6BM72 1044 aa13□□□□□ -0.33
VPS35-210ENST00000568784 CRTAPO75718 401 aaPredicted RBP13□□□□□ -0.33
VPS35-210ENST00000568784 WISP1O95388 367 aa13□□□□□ -0.33
VPS35-210ENST00000568784 IL11P20809 199 aa13□□□□□ -0.33
VPS35-210ENST00000568784 MST1P26927 711 aa13□□□□□ -0.33
VPS35-210ENST00000568784 INSM1Q01101 510 aaPredicted RBP13□□□□□ -0.33
VPS35-210ENST00000568784 CHAF1BQ13112 559 aa13□□□□□ -0.33
VPS35-210ENST00000568784 SWI5Q1ZZU3 235 aa13□□□□□ -0.33
VPS35-210ENST00000568784 PLEKHN1Q494U1 663 aaPredicted RBP13□□□□□ -0.33
VPS35-210ENST00000568784 C1orf140Q5VVS0 124 aa13□□□□□ -0.33
VPS35-210ENST00000568784 TMPPEQ6ZT21 453 aa13□□□□□ -0.33
VPS35-210ENST00000568784 LYG2Q86SG7 212 aa13□□□□□ -0.33
VPS35-210ENST00000568784 TMEM229BQ8NBD8 167 aa13□□□□□ -0.33
VPS35-210ENST00000568784 RNF128Q8TEB7 428 aa13□□□□□ -0.33
VPS35-210ENST00000568784 ASB17Q8WXJ9 295 aa13□□□□□ -0.33
VPS35-210ENST00000568784 PIGMQ9H3S5 423 aa13□□□□□ -0.33
VPS35-210ENST00000568784 CNTD2Q9H8S5 307 aa13□□□□□ -0.33
VPS35-210ENST00000568784 ZNF629Q9UEG4 869 aaPredicted RBP13□□□□□ -0.33
VPS35-210ENST00000568784 AMY2BP19961 511 aa13□□□□□ -0.33
VPS35-210ENST00000568784 SLC6A9P48067 706 aa13□□□□□ -0.33
VPS35-210ENST00000568784 TLE3Q04726 772 aa13□□□□□ -0.33
VPS35-210ENST00000568784 KCNRGQ8N5I3 272 aa13□□□□□ -0.33
VPS35-210ENST00000568784 PRELID3BQ9Y3B1 194 aa13□□□□□ -0.33
VPS35-210ENST00000568784 CD1AP06126 327 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 GP1BAP07359 652 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 MEF2DQ14814 521 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 JMJD6Q6NYC1 403 aaPredicted RBP12.99□□□□□ -0.33
VPS35-210ENST00000568784 RTN4RL2Q86UN3 420 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 OR52N5Q8NH56 324 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 THRSPQ92748 146 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 MCHR2Q969V1 340 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 ELSPBP1Q96BH3 223 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 S100A13Q99584 98 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 CMSS1Q9BQ75 279 aaKnown RBP12.99□□□□□ -0.33
VPS35-210ENST00000568784 OR5K4A6NMS3 321 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 ITGB2P05107 769 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 PSMB6P28072 239 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 CLDN6P56747 220 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 MRPL22Q9NWU5 206 aaKnown RBP12.99□□□□□ -0.33
VPS35-210ENST00000568784 MAP1BP46821 2468 aaKnown RBP12.99□□□□□ -0.33
VPS35-210ENST00000568784 C9orf170A2RU37 121 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 NPIPB9F8W1W9 429 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 SERTAD2Q14140 314 aa12.99□□□□□ -0.33
VPS35-210ENST00000568784 MPPED2Q15777 294 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms