RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 COPS7AQ9UBW8 275 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 SLC9A2Q9UBY0 812 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 HSPB7Q9UBY9 170 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 RAB22AQ9UL26 194 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 NIP7Q9Y221 180 aaKnown RBP eCLIP2.9□□□□□ -1.95
VPS35-208ENST00000568612 ST3GAL6Q9Y274 331 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 EXOGQ9Y2C4 368 aaKnown RBP2.9□□□□□ -1.95
VPS35-208ENST00000568612 GSTK1Q9Y2Q3 226 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 AMDHD2Q9Y303 409 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PKP3Q9Y446 797 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 LRP12Q9Y561 859 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 FLVCR1Q9Y5Y0 555 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 SIRT4Q9Y6E7 314 aaPredicted RBP2.9□□□□□ -1.95
VPS35-208ENST00000568612 FOCADQ5VW36 1801 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 DOCK5Q9H7D0 1870 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 RGPD3A6NKT7 1758 aaPredicted RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 RGPD4Q7Z3J3 1758 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 A0A087WZY1 265 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 LOC102723532A0A0G2JNH3 316 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OR2M5A3KFT3 312 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OR2W5A6NFC9 320 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 FBLL1A6NHQ2 334 aaKnown RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 C2CD4BA6NLJ0 364 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 HEPACAM2A8MVW5 462 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OR11H12B2RN74 326 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 H3BN98 237 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 SULT2B1O00204 365 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 UPK1AO00322 258 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 MANBAO00462 879 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 FAAHO00519 579 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 ACKR2O00590 384 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OR7A17O14581 309 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 PRYO14603 147 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 GOSR2O14653 212 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 ARPC2O15144 300 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 SLC16A5O15375 505 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 FFAR2O15552 330 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 SNAI2O43623 268 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 EIF4E2O60573 245 aaKnown RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 PRAF2O60831 178 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 SCGB2A1O75556 95 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 RAD51DO75771 328 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 TXNDC12O95881 172 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 VTNP04004 478 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 LCATP04180 440 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 ALDOBP05062 364 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 FABP3P05413 133 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 UCHL1P09936 223 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 SMIM10L1P0DMW3 83 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 GZMBP10144 247 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 CD37P11049 281 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 ZBTB25P24278 435 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 NFYBP25208 207 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 GABRR2P28476 465 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 SSTR1P30872 391 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 AKT2P31751 481 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OTX2P32243 289 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 BTCP35070 178 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 APLNRP35414 380 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 PIGAP37287 484 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 MAGEA12P43365 314 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 TAF6P49848 677 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 AGTR2P50052 363 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 BLKP51451 505 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 ATP5J2P56134 94 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 CLDN12P56749 244 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 OR10A3P58181 314 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 SEC61A1P61619 476 aaKnown RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 RAB11AP62491 216 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 RANP62826 216 aaKnown RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 CSNK2A1P68400 391 aaPredicted RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 BTG2P78543 158 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 BDH1Q02338 343 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 CFHR1Q03591 330 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 DMWDQ09019 674 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 MAMLD1Q13495 774 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 CRMP1Q14194 572 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 GPNMBQ14956 572 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 PCLAFQ15004 111 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 PGM5Q15124 567 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 PTGES3Q15185 160 aaKnown RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 MAPK14Q16539 360 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 RBBP7Q16576 425 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 IQCJQ1A5X6 159 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 ODF4Q2M2E3 257 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 ALKBH6Q3KRA9 238 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 PDLIM3Q53GG5 364 aaPredicted RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 EIPR1Q53HC9 387 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 ZNF628Q5EBL2 1059 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 SPIN3Q5JUX0 258 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 C1orf194Q5T5A4 169 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 C10orf25Q5T742 122 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 HENMT1Q5T8I9 393 aaKnown RBP2.89□□□□□ -1.95
VPS35-208ENST00000568612 SLC22A10Q63ZE4 541 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 FAM90A2PQ658T7 463 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 FAAP20Q6NZ36 180 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 DNM1P34Q6PK57 102 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 TMEM205Q6UW68 189 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 TIFABQ6ZNK6 161 aa2.89□□□□□ -1.95
VPS35-208ENST00000568612 ZCCHC23Q6ZST2 131 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms