RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 SLC25A40Q8TBP6 338 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 FAM168AQ92567 244 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 SPTSSAQ969W0 71 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 APOBEC3DQ96AK3 386 aaPredicted RBP11.15□□□□□ -0.62
CLK3-224ENST00000568605 COX4I2Q96KJ9 171 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 INTS14Q96SY0 518 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 PIMREGQ9BSJ6 248 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 OR2J1Q9GZK6 312 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 CYSLTR2Q9NS75 346 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 TAAR3PQ9P1P4 343 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 GRIP1Q9Y3R0 1128 aa11.15□□□□□ -0.62
CLK3-224ENST00000568605 TRIM64A6NGJ6 449 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 TVP23AA6NH52 213 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 TRIM64BA6NI03 449 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 SAC3D1A6NKF1 404 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 ZNF878C9JN71 531 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 IGHV3-13P01766 116 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 INHBBP09529 407 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 CLUP10909 449 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 GSTT1P30711 240 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 ALDH3B1P43353 468 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 TPTEP56180 551 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 PTGES3Q15185 160 aaKnown RBP11.14□□□□□ -0.63
CLK3-224ENST00000568605 TAF13Q15543 124 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 MSMPQ1L6U9 139 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 PCGF3Q3KNV8 242 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 KLHL12Q53G59 568 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 TEX30Q5JUR7 227 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 SPATA46Q5T0L3 261 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 DNM1P46Q6ZS02 220 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 CXXC5Q7LFL8 322 aaKnown RBP11.14□□□□□ -0.63
CLK3-224ENST00000568605 SHFQ7M4L6 423 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 ERI1Q8IV48 349 aaKnown RBP11.14□□□□□ -0.63
CLK3-224ENST00000568605 ZNF525Q8N782 197 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 OR6N2Q8NGY6 317 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 KLF14Q8TD94 323 aaPredicted RBP11.14□□□□□ -0.63
CLK3-224ENST00000568605 MARS2Q96GW9 593 aaKnown RBP11.14□□□□□ -0.63
CLK3-224ENST00000568605 CIB1Q99828 191 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 OR51V1Q9H2C8 321 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 TPK1Q9H3S4 243 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 DDX28Q9NUL7 540 aaKnown RBP11.14□□□□□ -0.63
CLK3-224ENST00000568605 TVP23BQ9NYZ1 205 aa11.14□□□□□ -0.63
CLK3-224ENST00000568605 LOC390937A0A1W2PQ73 354 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 TIMM8AO60220 97 aaPredicted RBP11.13□□□□□ -0.63
CLK3-224ENST00000568605 SLC15A1P46059 708 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 SLC6A9P48067 706 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 RAD23AP54725 363 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 PPP2R2BQ00005 443 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 GABPB1Q06547 395 aaPredicted RBP11.13□□□□□ -0.63
CLK3-224ENST00000568605 TNK1Q13470 666 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 MAD2L1BPQ15013 274 aaPredicted RBP11.13□□□□□ -0.63
CLK3-224ENST00000568605 CARTPTQ16568 116 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 DCXRQ7Z4W1 244 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 LRP11Q86VZ4 500 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 CPOQ8IVL8 374 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 ZNF540Q8NDQ6 660 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 SLC7A6Q92536 515 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 MAP6Q96JE9 813 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 COPS4Q9BT78 406 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 GABARAPL3Q9BY60 117 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 MED20Q9H944 212 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 WDR76Q9H967 626 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 HINT3Q9NQE9 182 aaKnown RBP11.13□□□□□ -0.63
CLK3-224ENST00000568605 DLL4Q9NR61 685 aa11.13□□□□□ -0.63
CLK3-224ENST00000568605 MYEF2Q9P2K5 600 aaKnown RBP11.13□□□□□ -0.63
CLK3-224ENST00000568605 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.13□□□□□ -0.637e-15■■■■□ 20
CLK3-224ENST00000568605 ZAR1LA6NP61 321 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 C17orf100A8MU93 164 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 F5H5K5 113 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 H3BNX3 289 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 M0R135 149 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 ZNF593O00488 134 aaPredicted RBP11.12□□□□□ -0.63
CLK3-224ENST00000568605 SMAD7O15105 426 aaKnown RBP11.12□□□□□ -0.63
CLK3-224ENST00000568605 CLPTM1O96005 669 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 NGFP01138 241 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 APOC1P02654 83 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 DBHP09172 617 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 NAT2P11245 290 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 DAOP14920 347 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 HSD11B1P28845 292 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 RPS27P42677 84 aaKnown RBP11.12□□□□□ -0.63
CLK3-224ENST00000568605 GRB2P62993 217 aaKnown RBP11.12□□□□□ -0.63
CLK3-224ENST00000568605 DBPQ10586 325 aaPredicted RBP11.12□□□□□ -0.63
CLK3-224ENST00000568605 MALLQ13021 153 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 EIF2B1Q14232 305 aaKnown RBP11.12□□□□□ -0.63
CLK3-224ENST00000568605 PCK2Q16822 640 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 ALKBH6Q3KRA9 238 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 FAM209AQ5JX71 171 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 LINC01590Q5TEZ4 76 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 SLX4IPQ5VYV7 408 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 TMEM236Q5W0B7 351 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 LYPD4Q6UWN0 246 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 DRAM2Q6UX65 266 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 ZNF454Q8N9F8 522 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 ZNF511Q8NB15 262 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 C10orf105Q8TEF2 133 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 SLAMF6Q96DU3 332 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 ZNF799Q96GE5 643 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 DIRC2Q96SL1 478 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 PKP2Q99959 881 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms