RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 SCRN3Q0VDG4 424 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 COX10Q12887 443 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 ENDOGQ14249 297 aaKnown RBP6.04□□□□□ -1.44
VPS4A-203ENST00000564399 LAPTM4AQ15012 233 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 NPTX1Q15818 432 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 KCNJ8Q15842 424 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 ARMC4Q5T2S8 1044 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 FOXB2Q5VYV0 432 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 CCBE1Q6UXH8 406 aaPredicted RBP6.04□□□□□ -1.44
VPS4A-203ENST00000564399 C1orf122Q6ZSJ8 110 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 SYT9Q86SS6 491 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 RBM45Q8IUH3 476 aaKnown RBP6.04□□□□□ -1.44
VPS4A-203ENST00000564399 LYG1Q8N1E2 194 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 C10orf111Q8N326 155 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 KLHDC1Q8N7A1 406 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 SPERTQ8NA61 448 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 BHLHE23Q8NDY6 225 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 OR5L1Q8NGL2 311 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 MOSPD2Q8NHP6 518 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 FNDC8Q8TC99 324 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 SLC7A6Q92536 515 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 NMD3Q96D46 503 aaKnown RBP6.04□□□□□ -1.44
VPS4A-203ENST00000564399 PAIP2Q9BPZ3 127 aaKnown RBP6.04□□□□□ -1.44
VPS4A-203ENST00000564399 ALG12Q9BV10 488 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 SIRPDQ9H106 197 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 TXNIPQ9H3M7 391 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 EMC7Q9NPA0 242 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 MEPEQ9NQ76 525 aaPredicted RBP6.04□□□□□ -1.44
VPS4A-203ENST00000564399 UFSP2Q9NUQ7 469 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 ZNRD1Q9P1U0 126 aa6.04□□□□□ -1.44
VPS4A-203ENST00000564399 LOC100653049A0A140TA62 436 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 A0A1W2PRD5 423 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 A0A1W2PRF3 423 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 A0A1W2PRM7 423 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 EVPLLA8MZ36 301 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 RNASEK-C17orf49H0YIS7 233 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 M0QX08 132 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 UBDO15205 165 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 MLNRO43193 412 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 FAM20BO75063 409 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 KRT34O76011 436 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 OR7A10O76100 309 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 LYPD3O95274 346 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 MT-ND1P03886 318 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 VSIG10L2P0DP72 767 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 CD247P20963 164 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 PPIBP23284 216 aaKnown RBP6.03□□□□□ -1.44
VPS4A-203ENST00000564399 EEF1B2P24534 225 aaKnown RBP6.03□□□□□ -1.44
VPS4A-203ENST00000564399 FPR3P25089 353 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 EFNB2P52799 333 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 EMX1Q04741 257 aaPredicted RBP6.03□□□□□ -1.44
VPS4A-203ENST00000564399 OR8B8Q15620 311 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 DUSP7Q16829 419 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 DMRTA1Q5VZB9 504 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 SFRP4Q6FHJ7 346 aaPredicted RBP6.03□□□□□ -1.44
VPS4A-203ENST00000564399 C11orf88Q6PI97 169 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 FBXW12Q6X9E4 464 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 BTN2A1Q7KYR7 527 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 VMO1Q7Z5L0 202 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 IGFN1Q86VF2 1251 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 EIF1ADQ8N9N8 165 aaKnown RBP6.03□□□□□ -1.44
VPS4A-203ENST00000564399 OR4C13Q8NGP0 309 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 OR5R1Q8NH85 324 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 OR2T6Q8NHC8 308 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 PFN4Q8NHR9 129 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 CFHR4Q92496 578 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 RASD2Q96D21 266 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 R3HDM4Q96D70 268 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 SGTBQ96EQ0 304 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 ROPN1BQ9BZX4 212 aaPredicted RBP6.03□□□□□ -1.44
VPS4A-203ENST00000564399 PCDHAC1Q9H158 963 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 TMEM38AQ9H6F2 299 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 ROPN1Q9HAT0 212 aaPredicted RBP6.03□□□□□ -1.44
VPS4A-203ENST00000564399 POLE4Q9NR33 117 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 SDR39U1Q9NRG7 319 aaPredicted RBP6.03□□□□□ -1.44
VPS4A-203ENST00000564399 TMEM100Q9NV29 134 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 SLC25A37Q9NYZ2 338 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 CTSZQ9UBR2 303 aa6.03□□□□□ -1.44
VPS4A-203ENST00000564399 A0A1B0GVI7 797 aa6.02□□□□□ -1.45
VPS4A-203ENST00000564399 NPIPB13A6NJU9 1138 aa6.02□□□□□ -1.45
VPS4A-203ENST00000564399 NPIPB4C9JG80 1138 aa6.02□□□□□ -1.45
VPS4A-203ENST00000564399 K7EIL1 84 aa6.02□□□□□ -1.45
VPS4A-203ENST00000564399 LGALS8O00214 317 aa6.02□□□□□ -1.45
VPS4A-203ENST00000564399 OR10H3O60404 316 aa6.02□□□□□ -1.45
VPS4A-203ENST00000564399 ECDO95905 644 aaPredicted RBP6.02□□□□□ -1.45
VPS4A-203ENST00000564399 SCG5P05408 212 aa6.02□□□□□ -1.45
VPS4A-203ENST00000564399 GATA4P43694 442 aa6.02□□□□□ -1.45
VPS4A-203ENST00000564399 RGS6P49758 472 aa6.02□□□□□ -1.45
VPS4A-203ENST00000564399 RPL27P61353 136 aaKnown RBP6.02□□□□□ -1.45
VPS4A-203ENST00000564399 HOXA4Q00056 320 aaPredicted RBP6.02□□□□□ -1.45
VPS4A-203ENST00000564399 CD69Q07108 199 aa6.02□□□□□ -1.45
VPS4A-203ENST00000564399 MPPED2Q15777 294 aa6.02□□□□□ -1.45
VPS4A-203ENST00000564399 CDONQ4KMG0 1287 aa6.02□□□□□ -1.45
VPS4A-203ENST00000564399 ALG10Q5BKT4 473 aa6.02□□□□□ -1.45
VPS4A-203ENST00000564399 INTS11Q5TA45 600 aaKnown RBP6.02□□□□□ -1.45
VPS4A-203ENST00000564399 ZBTB37Q5TC79 503 aa6.02□□□□□ -1.45
VPS4A-203ENST00000564399 PRAMEF6Q5VXH4 476 aa6.02□□□□□ -1.45
VPS4A-203ENST00000564399 FOXL2NBQ6ZUU3 175 aa6.02□□□□□ -1.45
VPS4A-203ENST00000564399 TSPYL5Q86VY4 417 aaPredicted RBP6.02□□□□□ -1.45
VPS4A-203ENST00000564399 MSRB3Q8IXL7 192 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms