RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 USE1Q9NZ43 259 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 C19orf25Q9UFG5 118 aaPredicted RBP4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 DHRS7Q9Y394 339 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 UTP11Q9Y3A2 253 aaKnown RBP4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 GMPPBQ9Y5P6 360 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 AUP1Q9Y679 476 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 CUL9Q8IWT3 2517 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 MN1Q10571 1320 aaPredicted RBP4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 MKI67P46013 3256 aaKnown RBP4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 ASPDHA6ND91 283 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 TMEM114B3SHH9 223 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 H0YJX3 145 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 GFYI3L273 518 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 hCG_2039718K7EN88 272 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 KPNA3O00505 521 aaPredicted RBP4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 INSIG1O15503 277 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 PSMG1O95456 288 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 FSHBP01225 129 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 HOXD4P09016 255 aaPredicted RBP4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 CISD3P0C7P0 127 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 SLC35E2P0CK97 266 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 C21orf33P30042 268 aaPredicted RBP4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 DDOSTP39656 456 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 CAPZBP47756 277 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 PCYT1AP49585 367 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 CXCR4P61073 352 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 RPS13P62277 151 aaKnown RBP4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 ZNF91Q05481 1191 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 RIPPLY1Q0D2K3 151 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 DPYSL3Q14195 570 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 EIF2B1Q14232 305 aaKnown RBP4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 ZNF169Q14929 603 aaPredicted RBP4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 TMEM249Q2WGJ8 235 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 COX19Q49B96 90 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 C2CD6Q53TS8 623 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 VWA2Q5GFL6 755 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 ATP1A1-AS1Q5TC04 95 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 FAHD2BQ6P2I3 314 aaPredicted RBP4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 SPESP1Q6UW49 350 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 TMEM207Q6UWW9 146 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 GDPD4Q6W3E5 623 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 RTL4Q6ZR62 310 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 BHLHA9Q7RTU4 235 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 PRSS48Q7RTY5 328 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 OR4N5Q8IXE1 308 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 CYP4Z2PQ8N1L4 340 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 C2orf73Q8N5S3 287 aaPredicted RBP4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 ZNF383Q8NA42 475 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 OR2T33Q8NG76 320 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 TEX47Q8TBZ9 253 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 ACTRT1Q8TDG2 376 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 DNAJA3Q96EY1 480 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 FAHD2AQ96GK7 314 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 NSL1Q96IY1 281 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 OXGR1Q96P68 337 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 OR5B2Q96R09 309 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 EML4Q9HC35 981 aaKnown RBP4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 PLEKHJ1Q9NW61 149 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 RBM22Q9NW64 420 aaKnown RBP eCLIP4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 FBXL12Q9NXK8 326 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 CYB5R1Q9UHQ9 305 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 FBXL3Q9UKT7 428 aa4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 ELF5Q9UKW6 265 aaPredicted RBP4.39□□□□□ -1.71
VPS35P1-201ENST00000563400 COL4A4P53420 1690 aaPredicted RBP4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 IGHV2-70DA0A0C4DH43 119 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 TMEM272A0A1B0GTI8 110 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 A0A1B0GW55 424 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 K7EQS6 105 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 HAT1O14929 419 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 ENSAO43768 121 aaKnown RBP4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 NARSO43776 548 aaKnown RBP4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 CXCL13O43927 109 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 ESRRBO95718 433 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 CLIC3O95833 236 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 FABP1P07148 127 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 DUX4L2P0CJ85 424 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 DUX4L3P0CJ86 424 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 DUX4L4P0CJ87 422 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 DUX4L5P0CJ88 424 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 DUX4L6P0CJ89 424 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 DUX4L7P0CJ90 424 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 IGHV4-30-4P0DP06 118 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 HKR1P10072 659 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 BCKDHAP12694 445 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 PRPS1L1P21108 318 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 MAS1LP35410 378 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 RGS6P49758 472 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 RPL8P62917 257 aaKnown RBP4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 SLC25A11Q02978 314 aaKnown RBP4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 TSPAN31Q12999 210 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 CST6Q15828 149 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 ATP6V1FQ16864 119 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 IMPG1Q17R60 797 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 WHAMMP3Q1A5X7 153 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 ZNF672Q499Z4 452 aaPredicted RBP4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 FAM106AQ4KMX7 169 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 IDNKQ5T6J7 187 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 ZNF425Q6IV72 752 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 C22orf39Q6P5X5 142 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 EMBQ6PCB8 327 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms