RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	ARPC2	O15144	300 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	PPP1R3D	O95685	299 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	ZNF26	P17031	533 aa	Predicted RBP	11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	SRP9	P49458	86 aa	Known RBP	11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	COX10	Q12887	443 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	MALL	Q13021	153 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	TMEM155	Q4W5P6	130 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	LEG1	Q6P5S2	330 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	FBXW12	Q6X9E4	464 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	USP43	Q70EL4	1123 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	DEFB107A	Q8IZN7	70 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	C1orf87	Q8N0U7	546 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	OR13G1	Q8NGZ3	307 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	NANP	Q8TBE9	248 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	CMBL	Q96DG6	245 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	SUCNR1	Q9BXA5	334 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	MSL2	Q9HCI7	577 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	TMEM106B	Q9NUM4	274 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445		V9GYQ6	96 aa		11.94	□□□□□ -0.5
TPM1-223	ENST00000560445	PLPP2	O43688	288 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	DEAF1	O75398	565 aa	Predicted RBP	11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	DIRAS1	O95057	198 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	HLA-DQA2	P01906	255 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	HOXB6	P17509	224 aa	Known RBP	11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	FUT4	P22083	530 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	FPR2	P25090	351 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	TSPAN31	Q12999	210 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	GK3P	Q14409	553 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	SEC23B	Q15437	767 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	C1orf94	Q6P1W5	598 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	THSD4	Q6ZMP0	1018 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	C1QL2	Q7Z5L3	287 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	TSEN54	Q7Z6J9	526 aa	Known RBP	11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	ZDHHC21	Q8IVQ6	265 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	ZNF283	Q8N7M2	679 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	OR2T4	Q8NH00	348 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	GTF3A	Q92664	365 aa	Known RBP	11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	SPTSSA	Q969W0	71 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	FUZ	Q9BT04	418 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	G6PC2	Q9NQR9	355 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	ARL8B	Q9NVJ2	186 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	UBAP1	Q9NZ09	502 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	CD300A	Q9UGN4	299 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	IL20RA	Q9UHF4	553 aa		11.93	□□□□□ -0.5
TPM1-223	ENST00000560445	TRIM77	I1YAP6	450 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	WNT9B	O14905	357 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	SEMG1	P04279	462 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	ZNF823	P16415	610 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	EPHA1	P21709	976 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	MSX2	P35548	267 aa	Predicted RBP	11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	MDH2	P40926	338 aa	Known RBP	11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	CDKN2A	P42771	156 aa	Known RBP	11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	GSS	P48637	474 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	BLVRA	P53004	296 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	BTG1	P62324	171 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	HIST1H3A	P68431	136 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	HIST2H3PS2	Q5TEC6	136 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	ZNF620	Q6ZNG0	422 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	PTCHD4	Q6ZW05	846 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	HIST2H3A	Q71DI3	136 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	BPIFB2	Q8N4F0	458 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	FAM86B1	Q8N7N1	296 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	ATG16L2	Q8NAA4	619 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	SLC26A10	Q8NG04	563 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	OR8G5	Q8NG78	346 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	NSL1	Q96IY1	281 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	CCT8L2	Q96SF2	557 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	PITX2	Q99697	317 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	ATF6B	Q99941	703 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	RBM4	Q9BWF3	364 aa	Known RBP	11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	TRIM15	Q9C019	465 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	SLC22A4	Q9H015	551 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	MAGIX	Q9H6Y5	334 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	RPRD1B	Q9NQG5	326 aa	Known RBP	11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	ACTR3B	Q9P1U1	418 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	B9D1	Q9UPM9	204 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	BAIAP2	Q9UQB8	552 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	STARD10	Q9Y365	291 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	CDH10	Q9Y6N8	788 aa		11.92	□□□□□ -0.5
TPM1-223	ENST00000560445	IGLV1-36	A0A0B4J1U3	117 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445		B2RBV5	119 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	DYNC1I1	O14576	645 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	RER1	O15258	196 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	SCG5	P05408	212 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	SBK2	P0C263	348 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	IRF2	P14316	349 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	RAD23A	P54725	363 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	TPTE	P56180	551 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	CCDC92	Q53HC0	331 aa	Predicted RBP	11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	ESCO2	Q56NI9	601 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	RBMS3	Q6XE24	437 aa	Known RBP	11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	ZBTB46	Q86UZ6	589 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	OR4K13	Q8NH42	304 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	ERGIC1	Q969X5	290 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	PLEKHA8	Q96JA3	519 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	OR2V2	Q96R30	315 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	NMNAT3	Q96T66	252 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	MRI1	Q9BV20	369 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	C7orf69	Q9H7B7	122 aa		11.91	□□□□□ -0.5
TPM1-223	ENST00000560445	NTN4	Q9HB63	628 aa		11.91	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms