RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 BARX1Q9HBU1 254 aaPredicted RBP8.05□□□□□ -1.12
LDLR-211ENST00000560173 SLC25A19Q9HC21 320 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 DLL4Q9NR61 685 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 PAPOLBQ9NRJ5 636 aaKnown RBP8.05□□□□□ -1.12
LDLR-211ENST00000560173 MRPL22Q9NWU5 206 aaKnown RBP8.05□□□□□ -1.12
LDLR-211ENST00000560173 CYB5R1Q9UHQ9 305 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 ATPIF1Q9UII2 106 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 NDRG4Q9ULP0 352 aaKnown RBP8.05□□□□□ -1.12
LDLR-211ENST00000560173 PMF1-BGLAPU3KQ54 211 aa8.05□□□□□ -1.12
LDLR-211ENST00000560173 NSD1Q96L73 2696 aaPredicted RBP8.05□□□□□ -1.12
LDLR-211ENST00000560173 SMIM31A0A1B0GVY4 71 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 TVP23AA6NH52 213 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 A6NHS1 94 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 FAM183AA6NL82 134 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 SURF4O15260 269 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 MITFO75030 526 aaPredicted RBP8.04□□□□□ -1.12
LDLR-211ENST00000560173 HLA-DQA2P01906 255 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 GYPBP06028 91 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 CLUP10909 449 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 ZNF250P15622 560 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 RAD52P43351 418 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 PPOXP50336 477 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 ERVS71-1P61550 626 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 ESRRGP62508 458 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 CDK5Q00535 292 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 LINC01590Q5TEZ4 76 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 RGS7BPQ6MZT1 257 aaPredicted RBP8.04□□□□□ -1.12
LDLR-211ENST00000560173 SLC18B1Q6NT16 456 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 CORO6Q6QEF8 472 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 LYPD4Q6UWN0 246 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 DNM1P46Q6ZS02 220 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 LRP11Q86VZ4 500 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 LINC00346Q8IVM7 164 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 ZNF786Q8N393 782 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 GJC3Q8NFK1 279 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 TSPAN14Q8NG11 270 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 OR51L1Q8NGJ5 315 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 OR1F12Q8NHA8 337 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 SORCS2Q96PQ0 1159 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 SYT3Q9BQG1 590 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 HCAR1Q9BXC0 346 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 GABARAPL3Q9BY60 117 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 BCL2L14Q9BZR8 327 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 HDHD2Q9H0R4 259 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 PLEK2Q9NYT0 353 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 UBAP1Q9NZ09 502 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 MYEF2Q9P2K5 600 aaKnown RBP8.04□□□□□ -1.12
LDLR-211ENST00000560173 KCNG2Q9UJ96 466 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 FBXO9Q9UK97 447 aaPredicted RBP8.04□□□□□ -1.12
LDLR-211ENST00000560173 FZR1Q9UM11 496 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 COMMD3-BMI1R4GMX3 469 aa8.04□□□□□ -1.12
LDLR-211ENST00000560173 IGLV3-9A0A075B6K5 115 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 TRIM64A6NGJ6 449 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 TRIM64BA6NI03 449 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 MPZL2O60487 215 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 MRPS14O60783 128 aaKnown RBP8.03□□□□□ -1.12
LDLR-211ENST00000560173 ABHD16AO95870 558 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 HMGN1P05114 100 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 LCKP06239 509 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 CCDC159P0C7I6 412 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 PSKH1P11801 424 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 PAICSP22234 425 aaKnown RBP8.03□□□□□ -1.12
LDLR-211ENST00000560173 FMO3P31513 532 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 EFNA4P52798 201 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 NUDT6P53370 316 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 CRISP1P54107 249 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 GABARAPL2P60520 117 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 CXCR4P61073 352 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 CLEC12BQ2HXU8 276 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 KRTAP27-1Q3LI81 207 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 ELFN2Q5R3F8 820 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 ZNF691Q5VV52 312 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 TMEM236Q5W0B7 351 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 CFAP77Q6ZQR2 320 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 ZNF511Q8NB15 262 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 OR1J1Q8NGS3 322 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 ABHD4Q8TB40 342 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 SYNPRQ8TBG9 265 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 SLC7A6Q92536 515 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 PTP4A1Q93096 173 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 MARS2Q96GW9 593 aaKnown RBP8.03□□□□□ -1.12
LDLR-211ENST00000560173 C4orf45Q96LM5 186 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 COQ7Q99807 217 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 MED20Q9H944 212 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 DYNLRB1Q9NP97 96 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 PNRC2Q9NPJ4 139 aaKnown RBP8.03□□□□□ -1.12
LDLR-211ENST00000560173 SCN3BQ9NY72 215 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 EIF3KQ9UBQ5 218 aaKnown RBP8.03□□□□□ -1.12
LDLR-211ENST00000560173 TMEFF2Q9UIK5 374 aaPredicted RBP8.03□□□□□ -1.12
LDLR-211ENST00000560173 GMPPBQ9Y5P6 360 aa8.03□□□□□ -1.12
LDLR-211ENST00000560173 A0A1W2PPW3 197 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 PRR23D1E9PI22 279 aaPredicted RBP8.02□□□□□ -1.13
LDLR-211ENST00000560173 H3BSA7 217 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 M0R233 179 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 SSX4O60224 188 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 LY6HO94772 140 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 F12P00748 615 aaPredicted RBP8.02□□□□□ -1.13
LDLR-211ENST00000560173 NGFP01138 241 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 ADRA2AP08913 450 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 DBHP09172 617 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 157.3 ms