RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 HDHD2Q9H0R4 259 aa14.91□□□□□ -0.02
LDLR-206ENST00000557958 ASH2LQ9UBL3 628 aa14.91□□□□□ -0.02
LDLR-206ENST00000557958 KCNMB2Q9Y691 235 aa14.91□□□□□ -0.02
LDLR-206ENST00000557958 LOC107986453A0A1B0GWG9 222 aa14.9□□□□□ -0.02
LDLR-206ENST00000557958 DHHO43323 396 aa14.9□□□□□ -0.02
LDLR-206ENST00000557958 SOX8P57073 446 aa14.9□□□□□ -0.02
LDLR-206ENST00000557958 PSMA6P60900 246 aaKnown RBP14.9□□□□□ -0.02
LDLR-206ENST00000557958 MFAP5Q13361 173 aa14.9□□□□□ -0.02
LDLR-206ENST00000557958 MADCAM1Q13477 382 aa14.9□□□□□ -0.02
LDLR-206ENST00000557958 ABLIM2Q6H8Q1 611 aa14.9□□□□□ -0.02
LDLR-206ENST00000557958 SLC25A25Q6KCM7 469 aa14.9□□□□□ -0.02
LDLR-206ENST00000557958 NRARPQ7Z6K4 114 aa14.9□□□□□ -0.02
LDLR-206ENST00000557958 C20orf196Q8IYI0 205 aa14.9□□□□□ -0.02
LDLR-206ENST00000557958 ENKURQ8TC29 256 aa14.9□□□□□ -0.02
LDLR-206ENST00000557958 ASB5Q8WWX0 329 aa14.9□□□□□ -0.02
LDLR-206ENST00000557958 RFT1Q96AA3 541 aa14.9□□□□□ -0.02
LDLR-206ENST00000557958 GFI1Q99684 422 aa14.9□□□□□ -0.02
LDLR-206ENST00000557958 TTTY12Q9BZ98 90 aa14.9□□□□□ -0.02
LDLR-206ENST00000557958 FAM206AQ9NX38 181 aa14.9□□□□□ -0.02
LDLR-206ENST00000557958 CAMK2AQ9UQM7 478 aa14.9□□□□□ -0.02
LDLR-206ENST00000557958 TRAV8-7A0A075B6U6 113 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 LINC00854A0A1B0GVQ3 168 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 MEGF11A6BM72 1044 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 H0YC42 278 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 NME2P1O60361 137 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 SP1P08047 785 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 NME2P22392 152 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 CFPP27918 469 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 SGCAQ16586 387 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 CFAP77Q6ZQR2 320 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 FOXL2NBQ6ZUU3 175 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 GALNTL5Q7Z4T8 443 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 LUZP2Q86TE4 346 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 SPACA3Q8IXA5 215 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 C15orf40Q8WUR7 153 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 PAQR5Q9NXK6 330 aaPredicted RBP14.89□□□□□ -0.03
LDLR-206ENST00000557958 STEAP1Q9UHE8 339 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 FOXD3Q9UJU5 478 aaPredicted RBP14.89□□□□□ -0.03
LDLR-206ENST00000557958 CLEC4AQ9UMR7 237 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 PCDHGA9Q9Y5G4 932 aaKnown RBP14.89□□□□□ -0.03
LDLR-206ENST00000557958 FLVCR1Q9Y5Y0 555 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 A0A0B4J203 849 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 RRP8O43159 456 aaKnown RBP14.89□□□□□ -0.03
LDLR-206ENST00000557958 ADRA2CP18825 462 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 STARP49675 285 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 GLT8D1Q68CQ7 371 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 ELMOD2Q8IZ81 293 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 MEIOBQ8N635 442 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 ZIC4Q8N9L1 334 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 MDS2Q8NDY4 140 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 GJC3Q8NFK1 279 aa14.89□□□□□ -0.03
LDLR-206ENST00000557958 S100A16Q96FQ6 103 aaKnown RBP14.89□□□□□ -0.03
LDLR-206ENST00000557958 NUFIP1Q9UHK0 495 aaKnown RBP14.89□□□□□ -0.03
LDLR-206ENST00000557958 MAP2K3P46734 347 aa14.88□□□□□ -0.03
LDLR-206ENST00000557958 SELENOPP49908 381 aa14.88□□□□□ -0.03
LDLR-206ENST00000557958 NDUFA5Q16718 116 aa14.88□□□□□ -0.03
LDLR-206ENST00000557958 AGAP6Q5VW22 663 aa14.88□□□□□ -0.03
LDLR-206ENST00000557958 ZNF57Q68EA5 555 aaPredicted RBP14.88□□□□□ -0.03
LDLR-206ENST00000557958 FCRLAQ7L513 359 aa14.88□□□□□ -0.03
LDLR-206ENST00000557958 AAED1Q7RTV5 226 aa14.88□□□□□ -0.03
LDLR-206ENST00000557958 OR10S1Q8NGN2 331 aa14.88□□□□□ -0.03
LDLR-206ENST00000557958 THAP7Q9BT49 309 aaPredicted RBP14.88□□□□□ -0.03
LDLR-206ENST00000557958 RBM24Q9BX46 236 aaKnown RBP14.88□□□□□ -0.03
LDLR-206ENST00000557958 PBOV1Q9GZY1 135 aa14.88□□□□□ -0.03
LDLR-206ENST00000557958 C11orf54Q9H0W9 315 aaPredicted RBP14.88□□□□□ -0.03
LDLR-206ENST00000557958 ABCG5Q9H222 651 aa14.88□□□□□ -0.03
LDLR-206ENST00000557958 CSAG2Q9Y5P2 127 aa14.88□□□□□ -0.03
LDLR-206ENST00000557958 ZNF716A6NP11 495 aa14.87□□□□□ -0.03
LDLR-206ENST00000557958 H3BSH0 61 aa14.87□□□□□ -0.03
LDLR-206ENST00000557958 ACOT7O00154 380 aa14.87□□□□□ -0.03
LDLR-206ENST00000557958 CYTIPO60759 359 aa14.87□□□□□ -0.03
LDLR-206ENST00000557958 TPPPO94811 219 aa14.87□□□□□ -0.03
LDLR-206ENST00000557958 RFX2P48378 723 aa14.87□□□□□ -0.03
LDLR-206ENST00000557958 MEOX1P50221 254 aa14.87□□□□□ -0.03
LDLR-206ENST00000557958 MMP15P51511 669 aa14.87□□□□□ -0.03
LDLR-206ENST00000557958 ART1P52961 327 aa14.87□□□□□ -0.03
LDLR-206ENST00000557958 CLDN15P56746 228 aa14.87□□□□□ -0.03
LDLR-206ENST00000557958 MRPS34P82930 218 aaKnown RBP14.87□□□□□ -0.03
LDLR-206ENST00000557958 HYAL4Q2M3T9 481 aa14.87□□□□□ -0.03
LDLR-206ENST00000557958 GPR137CQ8N3F9 429 aa14.87□□□□□ -0.03
LDLR-206ENST00000557958 NKAIN3Q8N8D7 197 aa14.87□□□□□ -0.03
LDLR-206ENST00000557958 TMEM178AQ8NBL3 297 aa14.87□□□□□ -0.03
LDLR-206ENST00000557958 HAS2Q92819 552 aa14.87□□□□□ -0.03
LDLR-206ENST00000557958 ZNF416Q9BWM5 594 aa14.87□□□□□ -0.03
LDLR-206ENST00000557958 RBFOX1Q9NWB1 397 aaKnown RBP14.87□□□□□ -0.03
LDLR-206ENST00000557958 A0A1B0GVI7 797 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 FAM166BA8MTA8 275 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 RGS13O14921 159 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 CTDSPLO15194 276 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 LYRM1O43325 122 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 SYT7O43581 403 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 SYNGR4O95473 234 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 APOC1P02654 83 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 MAGEA5P43359 124 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 CAPZA1P52907 286 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 ZNF766Q5HY98 468 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 CMTM4Q8IZR5 234 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 PPP1R14AQ96A00 147 aa14.86□□□□□ -0.03
LDLR-206ENST00000557958 DDX28Q9NUL7 540 aaKnown RBP14.86□□□□□ -0.03
LDLR-206ENST00000557958 OR5V1Q9UGF6 321 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms