RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 DAPP51397 102 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 TPTEP56180 551 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 GRB2P62993 217 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 TNK1Q13470 666 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 MSMPQ1L6U9 139 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 KRTAP27-1Q3LI81 207 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 CFAP77Q6ZQR2 320 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 ZNF525Q8N782 197 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 ZNF454Q8N9F8 522 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 KLF14Q8TD94 323 aaPredicted RBP12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 C10orf105Q8TEF2 133 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 PYDC1Q8WXC3 89 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 OTULINQ96BN8 352 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 OR2J1Q9GZK6 312 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 TOR3AQ9H497 397 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 OPA3Q9H6K4 179 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 SP140LQ9H930 580 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 MARCH7Q9H992 704 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 GRIP1Q9Y3R0 1128 aa12.32□□□□□ -0.44
CCDC88C-207ENST00000554051 MED13LQ71F56 2210 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 FLNAP21333 2647 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 GPANK1O95872 356 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 ADH4P08319 380 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 DAOP14920 347 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 RAC2P15153 192 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 SELEP16581 610 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 ALDH3B1P43353 468 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 ERVS71-1P61550 626 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 PPP2R2BQ00005 443 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 MALLQ13021 153 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 PTGES3Q15185 160 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 SNAPC1Q16533 368 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 LINC01590Q5TEZ4 76 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 ACSM5Q6NUN0 579 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 PLBD1Q6P4A8 553 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 CORO6Q6QEF8 472 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 DRAM2Q6UX65 266 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 FBXW12Q6X9E4 464 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 AMIGO2Q86SJ2 522 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 LINC00346Q8IVM7 164 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 ZNF786Q8N393 782 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 OR6N2Q8NGY6 317 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 UBASH3BQ8TF42 649 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 STMN2Q93045 179 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 COPS4Q9BT78 406 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 GABARAPL3Q9BY60 117 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 REG4Q9BYZ8 158 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 EGLN1Q9GZT9 426 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 PNRC2Q9NPJ4 139 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 ZDHHC8Q9ULC8 765 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 FZR1Q9UM11 496 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 AKAP9Q99996 3911 aa12.31□□□□□ -0.44
CCDC88C-207ENST00000554051 TVP23AA6NH52 213 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 FAM183AA6NL82 134 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 ZAR1LA6NP61 321 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 M0R135 149 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 ZNF593O00488 134 aaPredicted RBP12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 TIMM8AO60220 97 aaPredicted RBP12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 NGFP01138 241 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 GYPBP06028 91 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 HEXAP06865 529 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 KITLGP21583 273 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 ACHEP22303 614 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 TNFSF4P23510 183 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 GIFP27352 417 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 ZNF81P51508 661 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 RAD23AP54725 363 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 LOXL1Q08397 574 aaPredicted RBP12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 MAD2L1BPQ15013 274 aaPredicted RBP12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 TAF13Q15543 124 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 SPATA46Q5T0L3 261 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 SLX4IPQ5VYV7 408 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 COLCA1Q6ZS62 124 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 CXXC5Q7LFL8 322 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 DCXRQ7Z4W1 244 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 LRP11Q86VZ4 500 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 ERI1Q8IV48 349 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 GID4Q8IVV7 300 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 OR51L1Q8NGJ5 315 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 RDH5Q92781 318 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 ZNF799Q96GE5 643 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 CIB1Q99828 191 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 HCAR1Q9BXC0 346 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 C1QTNF5Q9BXJ0 243 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 TPK1Q9H3S4 243 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 CHODLQ9H9P2 273 aa12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 MYEF2Q9P2K5 600 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 NOP16Q9Y3C1 178 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-207ENST00000554051 HIVEP1P15822 2718 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 IGHV4-30-2A0A087WSY4 118 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 SLC22A31A6NKX4 558 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 RNF223E7ERA6 249 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 CLPTM1O96005 669 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 ACSM4P0C7M7 580 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 CLUP10909 449 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 OTX1P32242 354 aaPredicted RBP12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 MMP15P51511 669 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 RPS7P62081 194 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 KLHL12Q53G59 568 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 C12orf73Q69YU5 71 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms