RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 CFHR2P36980 270 aa14.08□□□□□ -0.16
VPS29-204ENST00000548259 CTXN1P60606 82 aa14.08□□□□□ -0.16
VPS29-204ENST00000548259 RUSC1-AS1Q66K80 236 aa14.08□□□□□ -0.16
VPS29-204ENST00000548259 CLDN22Q8N7P3 220 aa14.08□□□□□ -0.16
VPS29-204ENST00000548259 PNLDC1Q8NA58 520 aaKnown RBP14.08□□□□□ -0.16
VPS29-204ENST00000548259 SCCPDHQ8NBX0 429 aa14.08□□□□□ -0.16
VPS29-204ENST00000548259 ERGIC1Q969X5 290 aa14.08□□□□□ -0.16
VPS29-204ENST00000548259 POFUT1Q9H488 388 aa14.08□□□□□ -0.16
VPS29-204ENST00000548259 C20orf141Q9NUB4 165 aa14.08□□□□□ -0.16
VPS29-204ENST00000548259 RIMS3Q9UJD0 308 aa14.08□□□□□ -0.16
VPS29-204ENST00000548259 PIN1P1O15428 100 aa14.07□□□□□ -0.16
VPS29-204ENST00000548259 SLC18A1P54219 525 aa14.07□□□□□ -0.16
VPS29-204ENST00000548259 KRTAP10-3P60369 221 aa14.07□□□□□ -0.16
VPS29-204ENST00000548259 AQP6Q13520 282 aa14.07□□□□□ -0.16
VPS29-204ENST00000548259 DLEU7Q6UYE1 221 aa14.07□□□□□ -0.16
VPS29-204ENST00000548259 FBXW12Q6X9E4 464 aa14.07□□□□□ -0.16
VPS29-204ENST00000548259 DHDDSQ86SQ9 333 aa14.07□□□□□ -0.16
VPS29-204ENST00000548259 TSPYL5Q86VY4 417 aaPredicted RBP14.07□□□□□ -0.16
VPS29-204ENST00000548259 NKAIN4Q8IVV8 208 aa14.07□□□□□ -0.16
VPS29-204ENST00000548259 CCDC28BQ9BUN5 200 aa14.07□□□□□ -0.16
VPS29-204ENST00000548259 CDADC1Q9BWV3 514 aa14.07□□□□□ -0.16
VPS29-204ENST00000548259 NDEL1Q9GZM8 345 aa14.07□□□□□ -0.16
VPS29-204ENST00000548259 MMADHCQ9H3L0 296 aaPredicted RBP14.07□□□□□ -0.16
VPS29-204ENST00000548259 TRIM36Q9NQ86 728 aa14.07□□□□□ -0.16
VPS29-204ENST00000548259 TMEM100Q9NV29 134 aa14.07□□□□□ -0.16
VPS29-204ENST00000548259 CAB39Q9Y376 341 aaPredicted RBP14.07□□□□□ -0.16
VPS29-204ENST00000548259 FAM96BQ9Y3D0 163 aa14.07□□□□□ -0.16
VPS29-204ENST00000548259 XKRYO14609 159 aa14.06□□□□□ -0.16
VPS29-204ENST00000548259 ANGPT2O15123 496 aa14.06□□□□□ -0.16
VPS29-204ENST00000548259 AHCYL1O43865 530 aa14.06□□□□□ -0.16
VPS29-204ENST00000548259 PIP5K1CO60331 668 aa14.06□□□□□ -0.16
VPS29-204ENST00000548259 MTPNP58546 118 aa14.06□□□□□ -0.16
VPS29-204ENST00000548259 ANKDD1AQ495B1 522 aa14.06□□□□□ -0.16
VPS29-204ENST00000548259 DHRS7BQ6IAN0 325 aaPredicted RBP14.06□□□□□ -0.16
VPS29-204ENST00000548259 OR2T2Q6IF00 324 aa14.06□□□□□ -0.16
VPS29-204ENST00000548259 APOBEC3DQ96AK3 386 aaPredicted RBP14.06□□□□□ -0.16
VPS29-204ENST00000548259 TAMM41Q96BW9 452 aa14.06□□□□□ -0.16
VPS29-204ENST00000548259 WDFY2Q96P53 400 aa14.06□□□□□ -0.16
VPS29-204ENST00000548259 CGREF1Q99674 301 aa14.06□□□□□ -0.16
VPS29-204ENST00000548259 HCAR1Q9BXC0 346 aa14.06□□□□□ -0.16
VPS29-204ENST00000548259 EMC7Q9NPA0 242 aa14.06□□□□□ -0.16
VPS29-204ENST00000548259 PTTG3PQ9NZH4 202 aa14.06□□□□□ -0.16
VPS29-204ENST00000548259 ATPIF1Q9UII2 106 aa14.06□□□□□ -0.16
VPS29-204ENST00000548259 NDUFAF1Q9Y375 327 aa14.06□□□□□ -0.16
VPS29-204ENST00000548259 IGHV1-69DA0A0B4J2H0 117 aa14.05□□□□□ -0.16
VPS29-204ENST00000548259 CENPVL3A0A0U1RRI6 287 aa14.05□□□□□ -0.16
VPS29-204ENST00000548259 OR6C6A6NF89 314 aa14.05□□□□□ -0.16
VPS29-204ENST00000548259 IFNA14P01570 189 aa14.05□□□□□ -0.16
VPS29-204ENST00000548259 IGHV1-69P01742 117 aa14.05□□□□□ -0.16
VPS29-204ENST00000548259 IGHV4-59P01825 116 aa14.05□□□□□ -0.16
VPS29-204ENST00000548259 SFTPBP07988 381 aa14.05□□□□□ -0.16
VPS29-204ENST00000548259 FPR3P25089 353 aa14.05□□□□□ -0.16
VPS29-204ENST00000548259 LDLRAD3Q86YD5 345 aa14.05□□□□□ -0.16
VPS29-204ENST00000548259 CELF2-AS1Q8N7Q2 184 aa14.05□□□□□ -0.16
VPS29-204ENST00000548259 ZSCAN4Q8NAM6 433 aaPredicted RBP14.05□□□□□ -0.16
VPS29-204ENST00000548259 OR1F12Q8NHA8 337 aa14.05□□□□□ -0.16
VPS29-204ENST00000548259 C10orf82Q8WW14 230 aa14.05□□□□□ -0.16
VPS29-204ENST00000548259 BPIFA2Q96DR5 249 aa14.05□□□□□ -0.16
VPS29-204ENST00000548259 C16orf95Q9H693 158 aa14.05□□□□□ -0.16
VPS29-204ENST00000548259 KAT8Q9H7Z6 458 aaKnown RBP14.05□□□□□ -0.16
VPS29-204ENST00000548259 GRHPRQ9UBQ7 328 aa14.05□□□□□ -0.16
VPS29-204ENST00000548259 NOP16Q9Y3C1 178 aaKnown RBP14.05□□□□□ -0.16
VPS29-204ENST00000548259 IGHV3-64DA0A0J9YX35 117 aa14.04□□□□□ -0.16
VPS29-204ENST00000548259 ELOVL7A1L3X0 281 aa14.04□□□□□ -0.16
VPS29-204ENST00000548259 C22orf46C9J442 243 aa14.04□□□□□ -0.16
VPS29-204ENST00000548259 F5H5P2 479 aa14.04□□□□□ -0.16
VPS29-204ENST00000548259 NDUFA2O43678 99 aa14.04□□□□□ -0.16
VPS29-204ENST00000548259 IFI30P13284 250 aa14.04□□□□□ -0.16
VPS29-204ENST00000548259 PSMB10P40306 273 aa14.04□□□□□ -0.16
VPS29-204ENST00000548259 GATA4P43694 442 aa14.04□□□□□ -0.16
VPS29-204ENST00000548259 IER3P46695 156 aa14.04□□□□□ -0.16
VPS29-204ENST00000548259 IDH3AP50213 366 aa14.04□□□□□ -0.16
VPS29-204ENST00000548259 ERFP50548 548 aa14.04□□□□□ -0.16
VPS29-204ENST00000548259 ST3GAL3Q11203 375 aa14.04□□□□□ -0.16
VPS29-204ENST00000548259 PIN1Q13526 163 aaPredicted RBP14.04□□□□□ -0.16
VPS29-204ENST00000548259 CCDC80Q76M96 950 aa14.04□□□□□ -0.16
VPS29-204ENST00000548259 OAFQ86UD1 273 aa14.04□□□□□ -0.16
VPS29-204ENST00000548259 BHLHE23Q8NDY6 225 aa14.04□□□□□ -0.16
VPS29-204ENST00000548259 ZNF583Q96ND8 569 aa14.04□□□□□ -0.16
VPS29-204ENST00000548259 IQCF6A8MYZ5 107 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 FBP2O00757 339 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 RPL4P36578 427 aaKnown RBP14.03□□□□□ -0.16
VPS29-204ENST00000548259 LSM6P62312 80 aaKnown RBP14.03□□□□□ -0.16
VPS29-204ENST00000548259 NFYCQ13952 458 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 VMACQ2NL98 169 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 C11orf91Q3C1V1 193 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 FAM201AQ5SY85 155 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 LYPD2Q6UXB3 125 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 ZNF841Q6ZN19 808 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 Q6ZTK2 550 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 IGFN1Q86VF2 1251 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 GALNT4Q8N4A0 578 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 DPP10Q8N608 796 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 OR10A6Q8NH74 314 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 Q8TCH9 128 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 LHX4Q969G2 390 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 C7orf26Q96N11 449 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 TBX15Q96SF7 602 aa14.03□□□□□ -0.16
VPS29-204ENST00000548259 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.03□□□□□ -0.16
VPS29-204ENST00000548259 POLR1DQ9Y2S0 133 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms