RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ALG1L2C9J202 215 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 POLR2HP52434 150 aaKnown RBP13.43□□□□□ -0.26
USP28-214ENST00000545540 TAS2R19P59542 299 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 ELAVL1Q15717 326 aaKnown RBP13.43□□□□□ -0.26
USP28-214ENST00000545540 TEX30Q5JUR7 227 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 ZNF584Q8IVC4 421 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 ZNF101Q8IZC7 436 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 NAXEQ8NCW5 288 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 ZNF775Q96BV0 537 aaPredicted RBP13.43□□□□□ -0.26
USP28-214ENST00000545540 TAS2R8Q9NYW2 309 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 POLR1DQ9Y2S0 133 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 C5orf63A6NC05 138 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 SFTPDP35247 375 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 PAPD4Q6PIY7 484 aaKnown RBP13.42□□□□□ -0.26
USP28-214ENST00000545540 GKN2Q86XP6 184 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 OR51E1Q8TCB6 317 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 ZBTB8AQ96BR9 441 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 FAM71F1Q96KD3 344 aaPredicted RBP13.42□□□□□ -0.26
USP28-214ENST00000545540 VRK1Q99986 396 aaPredicted RBP13.42□□□□□ -0.26
USP28-214ENST00000545540 G6PC2Q9NQR9 355 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 FSCN3Q9NQT6 498 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 ZC4H2Q9NQZ6 224 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 KIF25Q9UIL4 384 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 ZNF432O94892 652 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 STARP49675 285 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 FOXRED2Q8IWF2 684 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 PPA2Q9H2U2 334 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 FGF21Q9NSA1 209 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 TAS2R3Q9NYW6 316 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 IGKV3D-11A0A0A0MRZ8 115 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 RAMP1O60894 148 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 ITGB2P05107 769 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 ZNF735P0CB33 412 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 CD96P40200 585 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 UNC119Q13432 240 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 FAM166AQ6J272 317 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 PAQR4Q8N4S7 273 aaPredicted RBP13.42□□□□□ -0.26
USP28-214ENST00000545540 TMEM104Q8NE00 496 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 ZC3H10Q96K80 434 aaKnown RBP13.42□□□□□ -0.26
USP28-214ENST00000545540 ZNF578Q96N58 590 aaPredicted RBP13.42□□□□□ -0.26
USP28-214ENST00000545540 POTEKPQ9BYX7 375 aa13.42□□□□□ -0.26
USP28-214ENST00000545540 AKIRIN1Q9H9L7 192 aaPredicted RBP13.42□□□□□ -0.26
USP28-214ENST00000545540 C5orf51A6NDU8 294 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 PCP4L1A6NKN8 68 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 OR2AT4A6NND4 320 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 ZNF217O75362 1048 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 DXOO77932 396 aaKnown RBP13.41□□□□□ -0.26
USP28-214ENST00000545540 ZNF205O95201 554 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 TIAF1O95411 115 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 ERCC1P07992 297 aaPredicted RBP13.41□□□□□ -0.26
USP28-214ENST00000545540 NME1P15531 152 aaKnown RBP13.41□□□□□ -0.26
USP28-214ENST00000545540 C4BPBP20851 252 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 SLC26A5P58743 744 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 FOXF1Q12946 379 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 RNASE10Q5GAN6 216 aaKnown RBP13.41□□□□□ -0.26
USP28-214ENST00000545540 DNM1P46Q6ZS02 220 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 NAA40Q86UY6 237 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 CDH26Q8IXH8 852 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 ST8SIA2Q92186 375 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 DAZLQ92904 295 aaKnown RBP13.41□□□□□ -0.26
USP28-214ENST00000545540 MRGPRFQ96AM1 343 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 ZDHHC12Q96GR4 267 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 EVA1AQ9H8M9 152 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 GDF2Q9UK05 429 aaPredicted RBP13.41□□□□□ -0.26
USP28-214ENST00000545540 SESN1Q9Y6P5 492 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 MPTX1A8MV57 137 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 BCKDHBP21953 392 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 SLC6A8P48029 635 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 IL13RA1P78552 427 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 ADGRE4PQ86SQ3 457 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 TMEM200AQ86VY9 491 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 ANGPTL5Q86XS5 388 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 ARMC10Q8N2F6 343 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 BVESQ8NE79 360 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 OR1N1Q8NGS0 311 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 C11orf40Q8WZ69 217 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 UTP23Q9BRU9 249 aaKnown RBP13.41□□□□□ -0.26
USP28-214ENST00000545540 MRI1Q9BV20 369 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 RPH3AQ9Y2J0 694 aaPredicted RBP13.41□□□□□ -0.26
USP28-214ENST00000545540 TRIM77I1YAP6 450 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 MASP2O00187 686 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 F12P00748 615 aaPredicted RBP13.41□□□□□ -0.26
USP28-214ENST00000545540 MPGP29372 298 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 ACTBP60709 375 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 ACTG1P63261 375 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 HSD11B2P80365 405 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 DHODHQ02127 395 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 TMEM88Q6PEY1 159 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 OR5M9Q8NGP3 310 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 MARCH1Q8TCQ1 289 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 ZNF275Q9NSD4 429 aaPredicted RBP13.41□□□□□ -0.26
USP28-214ENST00000545540 VSX1Q9NZR4 365 aaPredicted RBP13.41□□□□□ -0.26
USP28-214ENST00000545540 R4GMQ9 66 aa13.41□□□□□ -0.26
USP28-214ENST00000545540 CACNA1EQ15878 2313 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.4□□□□□ -0.26
USP28-214ENST00000545540 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.4□□□□□ -0.26
USP28-214ENST00000545540 FAM74A7A6NL05 159 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 SDCBPO00560 298 aaPredicted RBP13.4□□□□□ -0.26
USP28-214ENST00000545540 SYT7O43581 403 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 EFNA2O43921 213 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms