RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ADAM5Q6NVV9 412 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 ARL9Q6T311 187 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 ZNF322Q6U7Q0 402 aaPredicted RBP14.82□□□□□ -0.04
LIG1-204ENST00000542460 HIST2H2ABQ8IUE6 130 aaPredicted RBP14.82□□□□□ -0.04
LIG1-204ENST00000542460 PAQR4Q8N4S7 273 aaPredicted RBP14.82□□□□□ -0.04
LIG1-204ENST00000542460 IPCEF1Q8WWN9 437 aaPredicted RBP14.82□□□□□ -0.04
LIG1-204ENST00000542460 SLC7A6Q92536 515 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 SPTSSAQ969W0 71 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 DCLRE1CQ96SD1 692 aaKnown RBP14.82□□□□□ -0.04
LIG1-204ENST00000542460 TBX5Q99593 518 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 COPS4Q9BT78 406 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 EIF3KQ9UBQ5 218 aaKnown RBP14.82□□□□□ -0.04
LIG1-204ENST00000542460 SPEF1Q9Y4P9 236 aa14.82□□□□□ -0.04
LIG1-204ENST00000542460 A0A1W2PQL4 384 aaPredicted RBP14.81□□□□□ -0.04
LIG1-204ENST00000542460 SHISA9B4DS77 424 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 F5H5K5 113 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 XPNPEP2O43895 674 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 DBHP09172 617 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 H2BFMP0C1H6 154 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 PCSK6P29122 969 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 OPRL1P41146 370 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 GRB2P62993 217 aaKnown RBP14.81□□□□□ -0.04
LIG1-204ENST00000542460 ROM1Q03395 351 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 EGR3Q06889 387 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 KRTAP27-1Q3LI81 207 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 ZNF787Q6DD87 383 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 DEGS2Q6QHC5 323 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 ZNF704Q6ZNC4 412 aaPredicted RBP14.81□□□□□ -0.04
LIG1-204ENST00000542460 KRT77Q7Z794 578 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 ACBD7Q8N6N7 88 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 OR52I1Q8NGK6 324 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 GGHQ92820 318 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 C4orf45Q96LM5 186 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 KCNJ15Q99712 375 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 MROQ9BYG7 248 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 CNOT2Q9NZN8 540 aaKnown RBP14.81□□□□□ -0.04
LIG1-204ENST00000542460 MYRFQ9Y2G1 1151 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 GRIP1Q9Y3R0 1128 aa14.81□□□□□ -0.04
LIG1-204ENST00000542460 DAPL1A0PJW8 107 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 EFCAB10A6NFE3 127 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 ICMTO60725 284 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 FAM20BO75063 409 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 ZNF254O75437 659 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 PLAUP00749 431 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 PIPP12273 146 aaPredicted RBP14.8□□□□□ -0.04
LIG1-204ENST00000542460 NR4A1P22736 598 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 DCKP27707 260 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 HSD11B1P28845 292 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 SSTR2P30874 369 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 OTX1P32242 354 aaPredicted RBP14.8□□□□□ -0.04
LIG1-204ENST00000542460 RAD52P43351 418 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 TPTEP56180 551 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 TLE4Q04727 773 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 HGFACQ04756 655 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 MED21Q13503 144 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 LRRN1Q6UXK5 716 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 UNQ6126/PRO20091Q6UXV3 157 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 ZNF679Q8IYX0 411 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 RFLNBQ8N5W9 214 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 NUP37Q8NFH4 326 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 KBTBD8Q8NFY9 601 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 OR8B4Q96RC9 309 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 NIPAL2Q9H841 368 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 FGF20Q9NP95 211 aaPredicted RBP14.8□□□□□ -0.04
LIG1-204ENST00000542460 INPP5EQ9NRR6 644 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 SCN3BQ9NY72 215 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 SLCO1C1Q9NYB5 712 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 PSORS1C1Q9UIG5 152 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 POU2F3Q9UKI9 436 aa14.8□□□□□ -0.04
LIG1-204ENST00000542460 SLC1A7O00341 560 aa14.79□□□□□ -0.04
LIG1-204ENST00000542460 IGHA1P01876 353 aa14.79□□□□□ -0.04
LIG1-204ENST00000542460 APOC1P02654 83 aa14.79□□□□□ -0.04
LIG1-204ENST00000542460 CCDC159P0C7I6 412 aa14.79□□□□□ -0.04
LIG1-204ENST00000542460 WNT5AP41221 380 aa14.79□□□□□ -0.04
LIG1-204ENST00000542460 UCP2P55851 309 aa14.79□□□□□ -0.04
LIG1-204ENST00000542460 ZNF540Q8NDQ6 660 aa14.79□□□□□ -0.04
LIG1-204ENST00000542460 SNX33Q8WV41 574 aa14.79□□□□□ -0.04
LIG1-204ENST00000542460 TMEM80Q96HE8 168 aa14.79□□□□□ -0.04
LIG1-204ENST00000542460 MYCBPQ99417 103 aaPredicted RBP14.79□□□□□ -0.04
LIG1-204ENST00000542460 TTTY10Q9BZA0 68 aa14.79□□□□□ -0.04
LIG1-204ENST00000542460 BCL2L14Q9BZR8 327 aa14.79□□□□□ -0.04
LIG1-204ENST00000542460 CLEC4MQ9H2X3 399 aaPredicted RBP14.79□□□□□ -0.04
LIG1-204ENST00000542460 ELOVL3Q9HB03 270 aa14.79□□□□□ -0.04
LIG1-204ENST00000542460 IKZF2Q9UKS7 526 aa14.79□□□□□ -0.04
LIG1-204ENST00000542460 LRRC42Q9Y546 428 aa14.79□□□□□ -0.04
LIG1-204ENST00000542460 ATP23Q9Y6H3 246 aa14.79□□□□□ -0.04
LIG1-204ENST00000542460 PKDREJQ9NTG1 2253 aa14.79□□□□□ -0.04
LIG1-204ENST00000542460 M0R135 149 aa14.78□□□□□ -0.04
LIG1-204ENST00000542460 ABHD16AO95870 558 aa14.78□□□□□ -0.04
LIG1-204ENST00000542460 ACSM4P0C7M7 580 aa14.78□□□□□ -0.04
LIG1-204ENST00000542460 RGS6P49758 472 aa14.78□□□□□ -0.04
LIG1-204ENST00000542460 PRKXP51817 358 aa14.78□□□□□ -0.04
LIG1-204ENST00000542460 NKX6-1P78426 367 aaPredicted RBP14.78□□□□□ -0.04
LIG1-204ENST00000542460 ZNF85Q03923 595 aa14.78□□□□□ -0.04
LIG1-204ENST00000542460 ST3GAL4Q11206 333 aa14.78□□□□□ -0.04
LIG1-204ENST00000542460 ZNF672Q499Z4 452 aaPredicted RBP14.78□□□□□ -0.04
LIG1-204ENST00000542460 DRAM2Q6UX65 266 aa14.78□□□□□ -0.04
LIG1-204ENST00000542460 SSX6Q7RTT6 188 aa14.78□□□□□ -0.04
LIG1-204ENST00000542460 TMEM200AQ86VY9 491 aa14.78□□□□□ -0.04
LIG1-204ENST00000542460 C1orf174Q8IYL3 243 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms