RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 ENTPD6O75354 484 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 ALOX5APP20292 161 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 LOXP28300 417 aaPredicted RBP15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 APOBEC3AP31941 199 aaPredicted RBP15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 GLRXP35754 106 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 CXCR4P61073 352 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 ISL1P61371 349 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 EGR3Q06889 387 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 DRAM2Q6UX65 266 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 KCTD20Q7Z5Y7 419 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 CDC20BQ86Y33 519 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNF584Q8IVC4 421 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNF611Q8N823 705 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 THEM6Q8WUY1 208 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNRF4Q8WWF5 429 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 SLAMF6Q96DU3 332 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 C4orf45Q96LM5 186 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNF184Q99676 751 aaPredicted RBP15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 DHRS9Q9BPW9 319 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 COPS4Q9BT78 406 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 ANKRD60Q9BZ19 345 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 NOX3Q9HBY0 568 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 MRPS18AQ9NVS2 196 aaKnown RBP15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 CISD1Q9NZ45 108 aaKnown RBP15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 DNAJC27Q9NZQ0 273 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 ATP23Q9Y6H3 246 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 CSMD2Q7Z408 3487 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 ACOD1A6NK06 481 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 SHISA9B4DS77 424 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 ABHD16AO95870 558 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 GPANK1O95872 356 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 CCNOP22674 350 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 HSD11B1P28845 292 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 EVX1P49640 407 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 UCP2P55851 309 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 AGAP6Q5VW22 663 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 KRT77Q7Z794 578 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 LINC00346Q8IVM7 164 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 SLC35F2Q8IXU6 374 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 FBXL14Q8N1E6 418 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 OR51G2Q8NGK0 314 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 ST7LQ8TDW4 575 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 HTRA1Q92743 480 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 APOBEC3DQ96AK3 386 aaPredicted RBP15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 MS4A3Q96HJ5 214 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 KCNJ15Q99712 375 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 ABHD6Q9BV23 337 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 ADGRL4Q9HBW9 690 aa15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 HEATR1Q9H583 2144 aaKnown RBP15.16■□□□□ 0.02
CLSTN3-210ENST00000540931 CCDC168Q8NDH2 2452 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 HIVEP1P15822 2718 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 ATP6V1G2-DDX39BF2Z307 99 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 SIAH2O43255 324 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 SELENOFO60613 162 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 CELA3BP08861 270 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 RPSAP08865 295 aaKnown RBP15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 TACSTD2P09758 323 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 H2BFMP0C1H6 154 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 NAA10P41227 235 aaPredicted RBP15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 ROM1Q03395 351 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 CORO6Q6QEF8 472 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 CFAP77Q6ZQR2 320 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 PLEKHG7Q6ZR37 379 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNF679Q8IYX0 411 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 AKAP1Q92667 903 aaKnown RBP eCLIP15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 RNFT2Q96EX2 444 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 MAP6Q96JE9 813 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 OPA3Q9H6K4 179 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 CA10Q9NS85 328 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 CENPMQ9NSP4 180 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 PLCXD1Q9NUJ7 323 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 SCN3BQ9NY72 215 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNF391Q9UJN7 358 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 EXOGQ9Y2C4 368 aaKnown RBP15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 CMAHPQ9Y471 501 aa15.15■□□□□ 0.02
CLSTN3-210ENST00000540931 EFCAB10A6NFE3 127 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 M0R129 80 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 M0R135 149 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 SULT1C4O75897 302 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 DBTP11182 482 aaKnown RBP15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 MYF6P23409 242 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 CFL1P23528 166 aaKnown RBP15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 DCKP27707 260 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 OTX1P32242 354 aaPredicted RBP15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 ACTA2P62736 377 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 ACTG2P63267 376 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 NKX6-1P78426 367 aaPredicted RBP15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 MALLQ13021 153 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 MRPL28Q13084 256 aaKnown RBP15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 SNTB2Q13425 540 aaKnown RBP15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 KRT80Q6KB66 452 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 RGS7BPQ6MZT1 257 aaPredicted RBP15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 TMEM154Q6P9G4 183 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 ACBD7Q8N6N7 88 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 OR52H1Q8NGJ2 320 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 FBLIM1Q8WUP2 373 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 UBE2FQ969M7 185 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 PIGTQ969N2 578 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 ZNF799Q96GE5 643 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 PLEKHF2Q9H8W4 249 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms