RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	TIMM10B	Q9Y5J6	103 aa		4.98	□□□□□ -1.61
CD44-231	ENST00000531110	SPIN1	Q9Y657	262 aa	Predicted RBP	4.98	□□□□□ -1.61
CD44-231	ENST00000531110	COL1A2	P08123	1366 aa		4.98	□□□□□ -1.61
CD44-231	ENST00000531110	DOCK1	Q14185	1865 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	LMO7	Q8WWI1	1683 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	TRAV34	A0A0B4J273	112 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	HELT	A6NFD8	242 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110		E9PQ18	207 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110		F6UZH7	168 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	TNFRSF11B	O00300	401 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	GOSR2	O14653	212 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	FGF16	O43320	207 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	TCF21	O43680	179 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	MMP23A	O75900	390 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	GLS	O94925	669 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-231	ENST00000531110	SYNGR4	O95473	234 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	NDUFB10	O96000	172 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	MT-ATP6	P00846	226 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	TGFA	P01135	160 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	SLC35G4	P0C7Q5	338 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	LAMP2	P13473	410 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	NELFE	P18615	380 aa	Known RBP	4.97	□□□□□ -1.61
CD44-231	ENST00000531110	AGTR1	P30556	359 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	CEACAM8	P31997	349 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-231	ENST00000531110	AQP2	P41181	271 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	PPT1	P50897	306 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	RPL14	P50914	215 aa	Known RBP	4.97	□□□□□ -1.61
CD44-231	ENST00000531110	STXBP1	P61764	594 aa	Known RBP	4.97	□□□□□ -1.61
CD44-231	ENST00000531110	CDK6	Q00534	326 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	FKBP3	Q00688	224 aa	Known RBP	4.97	□□□□□ -1.61
CD44-231	ENST00000531110	CD47	Q08722	323 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110		Q0VFX4	171 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	RAB31	Q13636	194 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	RHEB	Q15382	184 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	POU2AF1	Q16633	256 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	UGCG	Q16739	394 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	IQCJ	Q1A5X6	159 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	TMEM249	Q2WGJ8	235 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	ZNF699	Q32M78	642 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	PLPPR5	Q32ZL2	321 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	ZNF766	Q5HY98	468 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	GPR157	Q5UAW9	335 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	MARC1	Q5VT66	337 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	CAPN13	Q6MZZ7	669 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-231	ENST00000531110	DRAM2	Q6UX65	266 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	PAMR1	Q6UXH9	720 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	UNQ9370/PRO34162	Q6UXP9	181 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	ZNF620	Q6ZNG0	422 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110		Q6ZTK2	550 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	ZNF367	Q7RTV3	350 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	OR2W3	Q7Z3T1	314 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	SPATA19	Q7Z5L4	167 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	CTU1	Q7Z7A3	348 aa	Known RBP	4.97	□□□□□ -1.61
CD44-231	ENST00000531110	NIT1	Q86X76	327 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	LINC00346	Q8IVM7	164 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	ZFP82	Q8N141	532 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	FTMT	Q8N4E7	242 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	STXBP6	Q8NFX7	210 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	OR4C5	Q8NGB2	326 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	OR13C5	Q8NGS8	318 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	DUSP19	Q8WTR2	217 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	NPRL2	Q8WTW4	380 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	CANT1	Q8WVQ1	401 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	CACNG8	Q8WXS5	425 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	HSD17B8	Q92506	261 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	ISOC2	Q96AB3	205 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	ULK4	Q96C45	1275 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	RNF183	Q96D59	192 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	TECTB	Q96PL2	329 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	ACOX2	Q99424	681 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	PKMYT1	Q99640	499 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	NPAS2	Q99743	824 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	EGFL8	Q99944	293 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	TMEM204	Q9BSN7	226 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	SYT11	Q9BT88	431 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	RTN4R	Q9BZR6	473 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	GABARAPL1	Q9H0R8	117 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	C20orf85	Q9H1P6	137 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	SMDT1	Q9H4I9	107 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	WDR54	Q9H977	334 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	BEX1	Q9HBH7	125 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	C6orf50	Q9HD87	102 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	MBNL1	Q9NR56	388 aa	Known RBP	4.97	□□□□□ -1.61
CD44-231	ENST00000531110	MRPL27	Q9P0M9	148 aa	Known RBP	4.97	□□□□□ -1.61
CD44-231	ENST00000531110	MRTO4	Q9UKD2	239 aa	Known RBP	4.97	□□□□□ -1.61
CD44-231	ENST00000531110	KPTN	Q9Y664	436 aa		4.97	□□□□□ -1.61
CD44-231	ENST00000531110	RGPD2	P0DJD1	1756 aa		4.96	□□□□□ -1.61
CD44-231	ENST00000531110	LOXHD1	Q8IVV2	1947 aa		4.96	□□□□□ -1.62
CD44-231	ENST00000531110	BAZ2A	Q9UIF9	1905 aa	Known RBP	4.96	□□□□□ -1.62
CD44-231	ENST00000531110	ZSWIM8	A7E2V4	1837 aa		4.96	□□□□□ -1.62
CD44-231	ENST00000531110	SMCO3	A2RU48	225 aa		4.96	□□□□□ -1.62
CD44-231	ENST00000531110	LRIT2	A6NDA9	550 aa		4.96	□□□□□ -1.62
CD44-231	ENST00000531110	C4orf47	A7E2U8	309 aa		4.96	□□□□□ -1.62
CD44-231	ENST00000531110		A8MVM7	634 aa		4.96	□□□□□ -1.62
CD44-231	ENST00000531110	SNRPGP15	A8MWD9	76 aa		4.96	□□□□□ -1.62
CD44-231	ENST00000531110		E7EWF7	191 aa		4.96	□□□□□ -1.62
CD44-231	ENST00000531110	SMLR1	H3BR10	107 aa		4.96	□□□□□ -1.62
CD44-231	ENST00000531110		J3QR06	171 aa		4.96	□□□□□ -1.62
CD44-231	ENST00000531110	MFNG	O00587	321 aa		4.96	□□□□□ -1.62
CD44-231	ENST00000531110	ZNF264	O43296	627 aa		4.96	□□□□□ -1.62

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