RNA–Protein interactions for RNA: ENST00000492977.5

PTPN7-216, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 1,595 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-216ENST00000492977 RHBDL2Q9NX52 303 aa12.41□□□□□ -0.42
PTPN7-216ENST00000492977 NUFIP1Q9UHK0 495 aaKnown RBP12.41□□□□□ -0.42
PTPN7-216ENST00000492977 PHF3Q92576 2039 aaKnown RBP12.41□□□□□ -0.42
PTPN7-216ENST00000492977 LOC107986453A0A1B0GWG9 222 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 MEGF11A6BM72 1044 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 FAM166BA8MTA8 275 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 H3BSH0 61 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 RER1O15258 196 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 PLA2G10O15496 165 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 IGFBP3P17936 291 aaPredicted RBP12.4□□□□□ -0.42
PTPN7-216ENST00000492977 CTSSP25774 331 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 RFC3P40938 356 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 MAGEA5P43359 124 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 INPP1P49441 399 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 MRPS34P82930 218 aaKnown RBP12.4□□□□□ -0.42
PTPN7-216ENST00000492977 BCL2A1Q16548 175 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 MZT2BQ6NZ67 158 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 AAED1Q7RTV5 226 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 VASH2Q86V25 355 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 CADM3Q8N126 398 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 ZFP62Q8NB50 900 aaPredicted RBP12.4□□□□□ -0.42
PTPN7-216ENST00000492977 GJC3Q8NFK1 279 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 SNRNP27Q8WVK2 155 aaKnown RBP12.4□□□□□ -0.42
PTPN7-216ENST00000492977 RAB40AQ8WXH6 277 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 NABP1Q96AH0 204 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 SCMH1Q96GD3 660 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 ABHD1Q96SE0 405 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 ABCG5Q9H222 651 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 PAQR5Q9NXK6 330 aaPredicted RBP12.4□□□□□ -0.42
PTPN7-216ENST00000492977 OR5V1Q9UGF6 321 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 STEAP1Q9UHE8 339 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 CFAP54Q96N23 3096 aa12.4□□□□□ -0.42
PTPN7-216ENST00000492977 LINC00854A0A1B0GVQ3 168 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 CTDSPLO15194 276 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 NKX2-8O15522 239 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 TTRP02766 147 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 CELA3AP09093 270 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 ACSM4P0C7M7 580 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 PRKAR1AP10644 381 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 CD37P11049 281 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 ZNF708P17019 499 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 MMP15P51511 669 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 NOVA1P51513 510 aaKnown RBP12.39□□□□□ -0.43
PTPN7-216ENST00000492977 CLDN18P56856 261 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 HIST1H3AP68431 136 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 ARG2P78540 354 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 ENDOGQ14249 297 aaKnown RBP12.39□□□□□ -0.43
PTPN7-216ENST00000492977 RIPPLY2Q5TAB7 128 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 HIST2H3PS2Q5TEC6 136 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 FAM27BQ5VT28 67 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 HIST2H3AQ71DI3 136 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 CMTM4Q8IZR5 234 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 MEIOBQ8N635 442 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 CPT1CQ8TCG5 803 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 RFT1Q96AA3 541 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 TMEM45BQ96B21 275 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 THAP7Q9BT49 309 aaPredicted RBP12.39□□□□□ -0.43
PTPN7-216ENST00000492977 C11orf54Q9H0W9 315 aaPredicted RBP12.39□□□□□ -0.43
PTPN7-216ENST00000492977 ZNF552Q9H707 407 aaPredicted RBP12.39□□□□□ -0.43
PTPN7-216ENST00000492977 ACKR4Q9NPB9 350 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 DDX28Q9NUL7 540 aaKnown RBP12.39□□□□□ -0.43
PTPN7-216ENST00000492977 ETAA1Q9NY74 926 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 CLEC4AQ9UMR7 237 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 IGKV3D-15A0A087WSY6 115 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 A0A1B0GVC2 190 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 A6NIN4 97 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 P2RY10O00398 339 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 TPPPO94811 219 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 NTF4P34130 210 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 ART1P52961 327 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 PPIAP62937 165 aaKnown RBP12.39□□□□□ -0.43
PTPN7-216ENST00000492977 SLC10A1Q14973 349 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 LINC01559Q495D7 138 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 ZNF766Q5HY98 468 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 GLT8D1Q68CQ7 371 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 ASPHD2Q6ICH7 369 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 GPR137CQ8N3F9 429 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 TMEM178AQ8NBL3 297 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 DNAAF1Q8NEP3 725 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 ZNF775Q96BV0 537 aaPredicted RBP12.39□□□□□ -0.43
PTPN7-216ENST00000492977 S100A16Q96FQ6 103 aaKnown RBP12.39□□□□□ -0.43
PTPN7-216ENST00000492977 ZNF845Q96IR2 970 aaPredicted RBP12.39□□□□□ -0.43
PTPN7-216ENST00000492977 NEURL2Q9BR09 285 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 HDHD2Q9H0R4 259 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 SLC6A15Q9H2J7 730 aa12.39□□□□□ -0.43
PTPN7-216ENST00000492977 ZNF275Q9NSD4 429 aaPredicted RBP12.39□□□□□ -0.43
PTPN7-216ENST00000492977 CDV3Q9UKY7 258 aaKnown RBP12.39□□□□□ -0.43
PTPN7-216ENST00000492977 SLC17A2O00624 439 aa12.38□□□□□ -0.43
PTPN7-216ENST00000492977 SULT1B1O43704 296 aa12.38□□□□□ -0.43
PTPN7-216ENST00000492977 GSTZ1O43708 216 aaPredicted RBP12.38□□□□□ -0.43
PTPN7-216ENST00000492977 SSX4O60224 188 aa12.38□□□□□ -0.43
PTPN7-216ENST00000492977 SYNGR4O95473 234 aa12.38□□□□□ -0.43
PTPN7-216ENST00000492977 ACTL6AO96019 429 aa12.38□□□□□ -0.43
PTPN7-216ENST00000492977 HNRNPCP07910 306 aaKnown RBP eCLIP12.38□□□□□ -0.43
PTPN7-216ENST00000492977 MAP2K3P46734 347 aa12.38□□□□□ -0.43
PTPN7-216ENST00000492977 CLDN12P56749 244 aa12.38□□□□□ -0.43
PTPN7-216ENST00000492977 RTP5Q14D33 572 aa12.38□□□□□ -0.43
PTPN7-216ENST00000492977 OXLD1Q5BKU9 147 aa12.38□□□□□ -0.43
PTPN7-216ENST00000492977 LUZP2Q86TE4 346 aa12.38□□□□□ -0.43
PTPN7-216ENST00000492977 FAM109AQ8N4B1 249 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms