RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 PTGES3Q15185 160 aaKnown RBP12.65□□□□□ -0.38
USP4-212ENST00000486549 SNAPC1Q16533 368 aa12.65□□□□□ -0.38
USP4-212ENST00000486549 ZNF718Q3SXZ3 478 aa12.65□□□□□ -0.38
USP4-212ENST00000486549 KLHL12Q53G59 568 aa12.65□□□□□ -0.38
USP4-212ENST00000486549 KDM4DQ6B0I6 523 aa12.65□□□□□ -0.38
USP4-212ENST00000486549 CPOQ8IVL8 374 aa12.65□□□□□ -0.38
USP4-212ENST00000486549 SNX33Q8WV41 574 aa12.65□□□□□ -0.38
USP4-212ENST00000486549 IPCEF1Q8WWN9 437 aaPredicted RBP12.65□□□□□ -0.38
USP4-212ENST00000486549 POM121Q96HA1 1249 aa12.65□□□□□ -0.38
USP4-212ENST00000486549 MAP6Q96JE9 813 aa12.65□□□□□ -0.38
USP4-212ENST00000486549 COQ7Q99807 217 aa12.65□□□□□ -0.38
USP4-212ENST00000486549 CIB1Q99828 191 aa12.65□□□□□ -0.38
USP4-212ENST00000486549 POFUT1Q9H488 388 aa12.65□□□□□ -0.38
USP4-212ENST00000486549 GSX1Q9H4S2 264 aaPredicted RBP12.65□□□□□ -0.38
USP4-212ENST00000486549 HINT3Q9NQE9 182 aaKnown RBP12.65□□□□□ -0.38
USP4-212ENST00000486549 IGLV3-9A0A075B6K5 115 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 IGHV4-30-2A0A087WSY4 118 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 RNF223E7ERA6 249 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 F5H5K5 113 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 M0R129 80 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 GLCEO94923 617 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 EPHA2P29317 976 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 GSTT1P30711 240 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 RPS7P62081 194 aaKnown RBP12.64□□□□□ -0.39
USP4-212ENST00000486549 ESRRGP62508 458 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 LINC01590Q5TEZ4 76 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 CXXC5Q7LFL8 322 aaKnown RBP12.64□□□□□ -0.39
USP4-212ENST00000486549 DCXRQ7Z4W1 244 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 ERI1Q8IV48 349 aaKnown RBP12.64□□□□□ -0.39
USP4-212ENST00000486549 C10orf67Q8IYJ2 551 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 MAPK1IP1LQ8NDC0 245 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 BBS1Q8NFJ9 593 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 OR6N2Q8NGY6 317 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 KLF14Q8TD94 323 aaPredicted RBP12.64□□□□□ -0.39
USP4-212ENST00000486549 FAM168AQ92567 244 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 GTF3AQ92664 365 aaKnown RBP12.64□□□□□ -0.39
USP4-212ENST00000486549 PTP4A1Q93096 173 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 ZMYND19Q96E35 227 aaPredicted RBP12.64□□□□□ -0.39
USP4-212ENST00000486549 MARS2Q96GW9 593 aaKnown RBP12.64□□□□□ -0.39
USP4-212ENST00000486549 ATF6BQ99941 703 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 RHNO1Q9BSD3 238 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 MS4A5Q9H3V2 200 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 RIBC2Q9H4K1 309 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 SLCO1C1Q9NYB5 712 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 ATPIF1Q9UII2 106 aa12.64□□□□□ -0.39
USP4-212ENST00000486549 ZNF593O00488 134 aaPredicted RBP12.63□□□□□ -0.39
USP4-212ENST00000486549 ICMTO60725 284 aa12.63□□□□□ -0.39
USP4-212ENST00000486549 BLVRAP53004 296 aa12.63□□□□□ -0.39
USP4-212ENST00000486549 TMEM255AQ5JRV8 349 aa12.63□□□□□ -0.39
USP4-212ENST00000486549 DNM1P46Q6ZS02 220 aa12.63□□□□□ -0.39
USP4-212ENST00000486549 SPATC1Q76KD6 591 aa12.63□□□□□ -0.39
USP4-212ENST00000486549 OR10S1Q8NGN2 331 aa12.63□□□□□ -0.39
USP4-212ENST00000486549 NEU4Q8WWR8 484 aaPredicted RBP12.63□□□□□ -0.39
USP4-212ENST00000486549 DCLRE1CQ96SD1 692 aaKnown RBP12.63□□□□□ -0.39
USP4-212ENST00000486549 INTS14Q96SY0 518 aa12.63□□□□□ -0.39
USP4-212ENST00000486549 SMR3AQ99954 134 aa12.63□□□□□ -0.39
USP4-212ENST00000486549 PRRG3Q9BZD7 231 aa12.63□□□□□ -0.39
USP4-212ENST00000486549 S100A14Q9HCY8 104 aa12.63□□□□□ -0.39
USP4-212ENST00000486549 PNRC2Q9NPJ4 139 aaKnown RBP12.63□□□□□ -0.39
USP4-212ENST00000486549 TBCCD1Q9NVR7 557 aa12.63□□□□□ -0.39
USP4-212ENST00000486549 PTTG3PQ9NZH4 202 aa12.63□□□□□ -0.39
USP4-212ENST00000486549 ENOPH1Q9UHY7 261 aa12.63□□□□□ -0.39
USP4-212ENST00000486549 TMEFF2Q9UIK5 374 aaPredicted RBP12.63□□□□□ -0.39
USP4-212ENST00000486549 GPR160Q9UJ42 338 aa12.63□□□□□ -0.39
USP4-212ENST00000486549 STARD10Q9Y365 291 aa12.63□□□□□ -0.39
USP4-212ENST00000486549 NF1P21359 2839 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 PRKYO43930 277 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 SELENOFO60613 162 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 IGHV3-13P01766 116 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 CSF3P09919 207 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 DAOP14920 347 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 RGS6P49758 472 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 PDLIM4P50479 330 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 DSCR9P59020 149 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 PPP2R2BQ00005 443 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 ECH1Q13011 328 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 EIF2B1Q14232 305 aaKnown RBP12.62□□□□□ -0.39
USP4-212ENST00000486549 SLX4IPQ5VYV7 408 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 MBNL2Q5VZF2 373 aaKnown RBP12.62□□□□□ -0.39
USP4-212ENST00000486549 DPY19L4Q7Z388 723 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 C1orf174Q8IYL3 243 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 C10orf105Q8TEF2 133 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 SLAMF6Q96DU3 332 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 RBM4BQ9BQ04 359 aaKnown RBP12.62□□□□□ -0.39
USP4-212ENST00000486549 COPS4Q9BT78 406 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 OSBPL10Q9BXB5 764 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 REG4Q9BYZ8 158 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 CENPMQ9NSP4 180 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 CR1P17927 2039 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 ZFHX3Q15911 3703 aa12.62□□□□□ -0.39
USP4-212ENST00000486549 NIPBLQ6KC79 2804 aaeCLIP12.61□□□□□ -0.39
USP4-212ENST00000486549 PLSCR5A0PG75 271 aa12.61□□□□□ -0.39
USP4-212ENST00000486549 ZAR1LA6NP61 321 aa12.61□□□□□ -0.39
USP4-212ENST00000486549 LYNX1G3V0Z9 82 aa12.61□□□□□ -0.39
USP4-212ENST00000486549 H3BSA7 217 aa12.61□□□□□ -0.39
USP4-212ENST00000486549 EI24O14681 340 aa12.61□□□□□ -0.39
USP4-212ENST00000486549 PRODHO43272 600 aa12.61□□□□□ -0.39
USP4-212ENST00000486549 TIMM8AO60220 97 aaPredicted RBP12.61□□□□□ -0.39
USP4-212ENST00000486549 MT-ND5P03915 603 aa12.61□□□□□ -0.39
USP4-212ENST00000486549 ACSM4P0C7M7 580 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms