RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 CFPP27918 469 aa18.16■□□□□ 0.5
USP40-215ENST00000484528 MSX2P35548 267 aaPredicted RBP18.16■□□□□ 0.5
USP40-215ENST00000484528 PRSS12P56730 875 aa18.16■□□□□ 0.5
USP40-215ENST00000484528 BTG1P62324 171 aa18.16■□□□□ 0.5
USP40-215ENST00000484528 ZMYND11Q15326 602 aa18.16■□□□□ 0.5
USP40-215ENST00000484528 OR2T2Q6IF00 324 aa18.16■□□□□ 0.5
USP40-215ENST00000484528 LEG1Q6P5S2 330 aa18.16■□□□□ 0.5
USP40-215ENST00000484528 SPICQ8N5J4 248 aa18.16■□□□□ 0.5
USP40-215ENST00000484528 ZNF283Q8N7M2 679 aa18.16■□□□□ 0.5
USP40-215ENST00000484528 ATG16L2Q8NAA4 619 aa18.16■□□□□ 0.5
USP40-215ENST00000484528 PTP4A1Q93096 173 aa18.16■□□□□ 0.5
USP40-215ENST00000484528 SIGLEC11Q96RL6 698 aa18.16■□□□□ 0.5
USP40-215ENST00000484528 SUCNR1Q9BXA5 334 aa18.16■□□□□ 0.5
USP40-215ENST00000484528 MMP26Q9NRE1 261 aa18.16■□□□□ 0.5
USP40-215ENST00000484528 TUBG2Q9NRH3 451 aa18.16■□□□□ 0.5
USP40-215ENST00000484528 IL19Q9UHD0 177 aa18.16■□□□□ 0.5
USP40-215ENST00000484528 IGLV1-36A0A0B4J1U3 117 aa18.15■□□□□ 0.5
USP40-215ENST00000484528 IGHV3-64DA0A0J9YX35 117 aa18.15■□□□□ 0.5
USP40-215ENST00000484528 TRIM77I1YAP6 450 aa18.15■□□□□ 0.5
USP40-215ENST00000484528 FSHBP01225 129 aa18.15■□□□□ 0.5
USP40-215ENST00000484528 RAC2P15153 192 aa18.15■□□□□ 0.5
USP40-215ENST00000484528 KCNMB1Q16558 191 aa18.15■□□□□ 0.5
USP40-215ENST00000484528 USP43Q70EL4 1123 aa18.15■□□□□ 0.5
USP40-215ENST00000484528 KLHL36Q8N4N3 616 aa18.15■□□□□ 0.5
USP40-215ENST00000484528 BHLHE23Q8NDY6 225 aa18.15■□□□□ 0.5
USP40-215ENST00000484528 COG8Q96MW5 612 aa18.15■□□□□ 0.5
USP40-215ENST00000484528 NMNAT3Q96T66 252 aa18.15■□□□□ 0.5
USP40-215ENST00000484528 OR52D1Q9H346 318 aa18.15■□□□□ 0.5
USP40-215ENST00000484528 FN3KQ9H479 309 aa18.15■□□□□ 0.5
USP40-215ENST00000484528 WDR76Q9H967 626 aa18.15■□□□□ 0.5
USP40-215ENST00000484528 PATZ1Q9HBE1 687 aaKnown RBP18.15■□□□□ 0.5
USP40-215ENST00000484528 SRA1Q9HD15 236 aaKnown RBP18.15■□□□□ 0.5
USP40-215ENST00000484528 ESM1Q9NQ30 184 aa18.15■□□□□ 0.5
USP40-215ENST00000484528 SURF4O15260 269 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 ZNF205O95201 554 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 GADD45GO95257 159 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 CRABP1P29762 137 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 PRDX6P30041 224 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 RGS6P49758 472 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 MMP16P51512 607 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 DNM1P34Q6PK57 102 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 JAZF1Q86VZ6 243 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 LINC00346Q8IVM7 164 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 DEFB108BQ8NET1 73 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 OR4K13Q8NH42 304 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 ZNF420Q8TAQ5 688 aaPredicted RBP18.14■□□□□ 0.49
USP40-215ENST00000484528 FAM216AQ8WUB2 273 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 GCDHQ92947 438 aaPredicted RBP18.14■□□□□ 0.49
USP40-215ENST00000484528 JMJD8Q96S16 334 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 HDHD2Q9H0R4 259 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 ATPIF1Q9UII2 106 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 B9D1Q9UPM9 204 aa18.14■□□□□ 0.49
USP40-215ENST00000484528 H0YL77 283 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 TRAPPC2LH3BP13 241 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 SEMG1P04279 462 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 SLC6A6P31641 620 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 HIST1H3AP68431 136 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 TMEM155Q4W5P6 130 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 HIST2H3PS2Q5TEC6 136 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 FBXW12Q6X9E4 464 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 HIST2H3AQ71DI3 136 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 LRRC28Q86X40 367 aaPredicted RBP18.13■□□□□ 0.49
USP40-215ENST00000484528 OR6V1Q8N148 313 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 GJC3Q8NFK1 279 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 OR5L1Q8NGL2 311 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 APOBEC3DQ96AK3 386 aaPredicted RBP18.13■□□□□ 0.49
USP40-215ENST00000484528 PYURFQ96I23 114 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 COQ7Q99807 217 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 IFT27Q9BW83 186 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 RBM4Q9BWF3 364 aaKnown RBP18.13■□□□□ 0.49
USP40-215ENST00000484528 GORASP2Q9H8Y8 452 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 GCM1Q9NP62 436 aa18.13■□□□□ 0.49
USP40-215ENST00000484528 RPRD1BQ9NQG5 326 aaKnown RBP18.13■□□□□ 0.49
USP40-215ENST00000484528 TMEM178BH3BS89 294 aa18.12■□□□□ 0.49
USP40-215ENST00000484528 OR10H3O60404 316 aa18.12■□□□□ 0.49
USP40-215ENST00000484528 CYB5R3P00387 301 aaPredicted RBP18.12■□□□□ 0.49
USP40-215ENST00000484528 RENP00797 406 aa18.12■□□□□ 0.49
USP40-215ENST00000484528 HIST1H1CP16403 213 aaKnown RBP18.12■□□□□ 0.49
USP40-215ENST00000484528 SLC6A9P48067 706 aa18.12■□□□□ 0.49
USP40-215ENST00000484528 RFX4Q33E94 735 aa18.12■□□□□ 0.49
USP40-215ENST00000484528 ARMCX4Q5H9R4 360 aa18.12■□□□□ 0.49
USP40-215ENST00000484528 PGM2L1Q6PCE3 622 aa18.12■□□□□ 0.49
USP40-215ENST00000484528 CFAP77Q6ZQR2 320 aa18.12■□□□□ 0.49
USP40-215ENST00000484528 ZDHHC22Q8N966 263 aa18.12■□□□□ 0.49
USP40-215ENST00000484528 SDR9C7Q8NEX9 313 aa18.12■□□□□ 0.49
USP40-215ENST00000484528 SLC26A10Q8NG04 563 aa18.12■□□□□ 0.49
USP40-215ENST00000484528 OR8G5Q8NG78 346 aa18.12■□□□□ 0.49
USP40-215ENST00000484528 MEGF10Q96KG7 1140 aa18.12■□□□□ 0.49
USP40-215ENST00000484528 MAGEL2Q9UJ55 1249 aa18.12■□□□□ 0.49
USP40-215ENST00000484528 PPIAL4AQ9Y536 164 aa18.12■□□□□ 0.49
USP40-215ENST00000484528 PPIAL4EA0A075B759 164 aa18.11■□□□□ 0.49
USP40-215ENST00000484528 PPIAL4CA0A0B4J2A2 164 aa18.11■□□□□ 0.49
USP40-215ENST00000484528 CEACAM18A8MTB9 384 aa18.11■□□□□ 0.49
USP40-215ENST00000484528 F5H0A9 414 aaPredicted RBP18.11■□□□□ 0.49
USP40-215ENST00000484528 PPIAL4DF5H284 164 aa18.11■□□□□ 0.49
USP40-215ENST00000484528 F5H5P2 479 aa18.11■□□□□ 0.49
USP40-215ENST00000484528 J3QW42 95 aa18.11■□□□□ 0.49
USP40-215ENST00000484528 ARPC2O15144 300 aa18.11■□□□□ 0.49
USP40-215ENST00000484528 MLNRO43193 412 aa18.11■□□□□ 0.49
USP40-215ENST00000484528 PPIAL4FP0DN26 164 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms